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Fatty acid desaturase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820830, updated on 18-Sep-2024

Summary

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Official Full Name
Fatty acid desaturase family protein
Primary source
TAIR:AT3G15870
Locus tag
AT3G15870
See related
Araport:AT3G15870
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
5
Sequence:
Chromosome: 3; NC_003074.8 (5362888..5364544)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene fatty acid desaturase 5 Neighboring gene plant self-incompatibility protein S1 family protein Neighboring gene WUS-interacting protein 2 Neighboring gene Protein kinase superfamily protein Neighboring gene homoserine O-acetyltransferase Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of the Arabidopsis palmitoyl-monogalactosyldiacylglycerol delta7-desaturase gene FAD5, and effects of plastidial retargeting of Arabidopsis desaturases on the fad5 mutant phenotype. Heilmann I, et al. Plant Physiol, 2004 Dec. PMID 15579662, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Lack of an effect of mutation at this site on the activity of the plastidial palmitoyl-monogalactosyldiacylglycerol Delta7-desaturase FAD5.
    Title: Identification of the Arabidopsis palmitoyl-monogalactosyldiacylglycerol delta7-desaturase gene FAD5, and effects of plastidial retargeting of Arabidopsis desaturases on the fad5 mutant phenotype.
Submit: New GeneRIF Correction

Pathways from PubChem

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General gene information

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NM_112457.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in unsaturated fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Fatty acid desaturase family protein
NP_188208.4
  • Fatty acid desaturase family protein; FUNCTIONS IN: oxidoreductase activity, oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water; INVOLVED IN: oxidation reduction, lipid metabolic process; EXPRESSED IN: sepal; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1, core (InterPro:IPR015876), Fatty acid desaturase, type 1 (InterPro:IPR005804); BEST Arabidopsis thaliana protein match is: fatty acid desaturase 5 (TAIR:AT3G15850.1); Has 3450 Blast hits to 3450 proteins in 826 species: Archae - 0; Bacteria - 1558; Metazoa - 797; Fungi - 221; Plants - 106; Viruses - 4; Other Eukaryotes - 764 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    5362888..5364544
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112457.6 → NP_188208.4  Fatty acid desaturase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188208.4

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q5IGR4, Q9LVZ3
    UniProtKB/TrEMBL
    A0A178V6D6, A0A5S9XCP9
    Conserved Domains (1) summary
    cl00615
    Location:78 → 361
    Membrane-FADS-like; The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane hydroxylases, beta carotene ketolases (CrtW-like), hydroxylases (CrtR-like), and other related proteins. They are present in all groups of organisms with the ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LVZ3.3

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