Plasma-membrane choline transporter family protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: Plasma-membrane choline transporter family protein
Primary source: TAIR:AT3G15380
Locus tag: AT3G15380
See related: Araport:AT3G15380
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: AtCTL1; CHER1; choline transporter-like 1
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 3

Exon count:: 10

Sequence:: Chromosome: 3; NC_003074.8 (5193203..5196591)

Chromosome 3 - NC_003074.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Choline transporter-like 1 (CTL1) positively regulates apical hook development in etiolated Arabidopsis seedlings.
Title: Choline transporter-like 1 (CTL1) positively regulates apical hook development in etiolated Arabidopsis seedlings.
CTL1 is involved in regulating vesicle trafficking and is thus required for the trafficking of proteins essential for ion transport and plasmodesmata development.
Title: A new vesicle trafficking regulator CTL1 plays a crucial role in ion homeostasis.
CTL1 controls seedling growth and apical hook development by regulating intracellular trafficking of PIN-type auxin transporters.
Title: Arabidopsis choline transporter-like 1 (CTL1) regulates secretory trafficking of auxin transporters to control seedling growth.
CHER1 is crucial for plasmodesmata maturation in Arabidopsis thaliana.
Title: Choline transporter-like1 (CHER1) is crucial for plasmodesmata maturation in Arabidopsis thaliana.

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General gene information

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NM_112406.5

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables choline transmembrane transporter activity	IDA Inferred from Direct Assay more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within choline transport	IDA Inferred from Direct Assay more info	PubMed
involved_in choline transport	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in leaf development	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in lipid homeostasis	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in monoatomic ion homeostasis	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within phloem development	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within plasmodesma organization	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in plasmodesma organization	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in plasmodesmata-mediated intercellular transport	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in procambium histogenesis	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in protein transport	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in regulation of auxin polar transport	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in regulation of endocytosis	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in regulation of unidimensional cell growth	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within root development	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in root development	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within sieve element differentiation	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in transmembrane transport	IEA Inferred from Electronic Annotation more info
involved_in vesicle-mediated transport	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within xylem and phloem pattern formation	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
colocalizes_with early endosome	IDA Inferred from Direct Assay more info	PubMed
located_in early endosome membrane	IDA Inferred from Direct Assay more info	PubMed
located_in nucleus	ISM Inferred from Sequence Model more info
located_in phragmoplast	IDA Inferred from Direct Assay more info	PubMed
located_in plant-type vacuole membrane	IDA Inferred from Direct Assay more info	PubMed
located_in plasma membrane	IDA Inferred from Direct Assay more info	PubMed
located_in plasmodesma	HDA more info	PubMed
located_in secondary plasmodesma	IMP Inferred from Mutant Phenotype more info	PubMed
located_in sieve plate	IDA Inferred from Direct Assay more info	PubMed
located_in symplast	IMP Inferred from Mutant Phenotype more info	PubMed
located_in trans-Golgi network	IDA Inferred from Direct Assay more info	PubMed
located_in trans-Golgi network membrane	IDA Inferred from Direct Assay more info	PubMed

General protein information

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Preferred Names: Plasma-membrane choline transporter family protein

NP_566511.1

Plasma-membrane choline transporter family protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); Has 948 Blast hits to 937 proteins in 182 species: Archae - 0; Bacteria - 0; Metazoa - 503; Fungi - 120; Plants - 118; Viruses - 0; Other Eukaryotes - 207 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003074.8 Reference assembly

Range

5193203..5196591

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_112406.5 → NP_566511.1 Plasma-membrane choline transporter family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_566511.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q94AN2, Q9LUQ4, Q9M7X1

UniProtKB/TrEMBL

A0A178VKI5, A0A5S9XCQ8, A0A654F7F7

Conserved Domains (1) summary

pfam04515
Location:326 → 670

Choline_transpo; Plasma-membrane choline transporter