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RIP1 cobalt ion binding protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820729, updated on 18-Sep-2024

Summary

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Official Symbol
RIP1
Official Full Name
cobalt ion binding protein
Primary source
TAIR:AT3G15000
Locus tag
AT3G15000
See related
Araport:AT3G15000
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MORF8; multiple organellar RNA editing factor 8; RNA-editing factor interacting protein 1
Summary
Encodes RIP1 (RNA-editing factor interacting protein 1). Involved in chloroplast and mitochondrial RNA editing.
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Genomic context

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See RIP1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Sequence:
Chromosome: 3; NC_003074.8 (5050195..5052455)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein Neighboring gene uncharacterized protein Neighboring gene Class I glutamine amidotransferase-like superfamily protein Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene Lactate/malate dehydrogenase family protein Neighboring gene TCP family transcription factor 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Mitochondrial Transcription Termination Factor 27 Is Required for Salt Tolerance in Arabidopsis thaliana. Jiang D, et al. Int J Mol Sci, 2021 Feb 2. PMID 33540552, Free PMC Article
  2. RIP1, a member of an Arabidopsis protein family, interacts with the protein RARE1 and broadly affects RNA editing. Bentolila S, et al. Proc Natl Acad Sci U S A, 2012 May 29. PMID 22566615, Free PMC Article
  3. Two RNA recognition motif-containing proteins are plant mitochondrial editing factors. Shi X, et al. Nucleic Acids Res, 2015 Apr 20. PMID 25800738, Free PMC Article
  4. MEF10 is required for RNA editing at nad2-842 in mitochondria of Arabidopsis thaliana and interacts with MORF8. Härtel B, et al. Plant Mol Biol, 2013 Mar. PMID 23288601
  5. Tetrapyrrole biosynthetic enzyme protoporphyrinogen IX oxidase 1 is required for plastid RNA editing. Zhang F, et al. Proc Natl Acad Sci U S A, 2014 Feb 4. PMID 24497494, Free PMC Article

See all (23) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Results support the model that specific combinations of MORF and MEF proteins are involved in RNA editing in plant mitochondria. The MEF10 protein interacts with multiple organellar RNA editing factor 8 (MORF8) but not with other mitochondrial MORF proteins in yeast two hybrid assays. [MORF8]
    Title: MEF10 is required for RNA editing at nad2-842 in mitochondria of Arabidopsis thaliana and interacts with MORF8.
  2. Data show that the presence RIP1 (At3g15000.1) in a protein complex with chloroplast editing factor RARE1 (At5g13270.1) indicates that RIP1 is an important component of the RNA editing apparatus that acts on many chloroplast and mitochondrial C targets.
    Title: RIP1, a member of an Arabidopsis protein family, interacts with the protein RARE1 and broadly affects RNA editing.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_112362.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables cobalt ion binding HDA PubMed 
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein dimerization activity IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein homodimerization activity IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within RNA modification IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within cytidine to uridine editing IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within mitochondrial mRNA modification IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
colocalizes_with chloroplast IPI
Inferred from Physical Interaction
more info
 PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in cytosol HDA PubMed 
located_in mitochondrion HDA PubMed 
located_in mitochondrion IDA
Inferred from Direct Assay
more info
 PubMed 
colocalizes_with mitochondrion IPI
Inferred from Physical Interaction
more info
 PubMed 

General protein information

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Preferred Names
cobalt ion binding protein
NP_566496.1
  • cobalt ion binding; FUNCTIONS IN: cobalt ion binding; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: plastid developmental protein DAG, putative (TAIR:AT3G06790.2); Has 57621 Blast hits to 29750 proteins in 1231 species: Archae - 14; Bacteria - 7130; Metazoa - 26978; Fungi - 8402; Plants - 8184; Viruses - 944; Other Eukaryotes - 5969 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    5050195..5052455
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112362.4 → NP_566496.1  cobalt ion binding protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566496.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q5XEU8, Q9LKA5
    UniProtKB/TrEMBL
    A0A178VHP9, A0A5S9XCS9
    Conserved Domains (1) summary
    pfam09606
    Location:263 → 385
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LKA5.1

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