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Zinc finger, C3HC4 type (RING finger) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820652, updated on 18-Sep-2024

Summary

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Official Full Name
Zinc finger, C3HC4 type (RING finger) family protein
Primary source
TAIR:AT3G14320
Locus tag
AT3G14320
See related
Araport:AT3G14320
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_003074.8 (4777594..4778345, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene pectinesterase family protein Neighboring gene pectin methylesterase 3 Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene uncharacterized protein Neighboring gene STRUBBELIG-receptor family 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. E3 ubiquitin ligase ATL61 acts as a positive regulator in abscisic acid mediated drought response in Arabidopsis. Yang R, et al. Biochem Biophys Res Commun, 2020 Jul 23. PMID 32499110
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ubiquitin protein ligase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cellular response to water deprivation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within protein ubiquitination IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Zinc finger, C3HC4 type (RING finger) family protein
NP_188049.1
  • Zinc finger, C3HC4 type (RING finger) family protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G53820.1); Has 9779 Blast hits to 9754 proteins in 298 species: Archae - 0; Bacteria - 2; Metazoa - 2465; Fungi - 778; Plants - 5098; Viruses - 64; Other Eukaryotes - 1372 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    4777594..4778345 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112290.2 → NP_188049.1  Zinc finger, C3HC4 type (RING finger) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188049.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LUL6
    UniProtKB/TrEMBL
    A0A178VN10, A0A654F8E7
    Conserved Domains (2) summary
    COG5243
    Location:88 → 194
    HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
    cd16461
    Location:87 → 130
    RING-H2_EL5_like; RING finger, H2 subclass, found in rice E3 ubiquitin-protein ligase EL5 and similar proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LUL6.1

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