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ATPMEPCRC pectinesterase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820650, updated on 18-Sep-2024

Summary

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Official Symbol
ATPMEPCRC
Official Full Name
pectinesterase family protein
Primary source
TAIR:AT3G14300
Locus tag
AT3G14300
See related
Araport:AT3G14300
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
A. THALIANA PECTIN METHYLESTERASE 26; ATPME26; PECTIN METHYLESTERASE 26; PME26
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Genomic context

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See ATPMEPCRC in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (4766905..4769936, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene 20S proteasome alpha subunit E2 Neighboring gene pectin methylesterase 3 Neighboring gene Zinc finger, C3HC4 type (RING finger) family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the pectin methylesterase-like gene AtPME3: a new member of a gene family comprising at least 12 genes in Arabidopsis thaliana. Micheli F, et al. Gene, 1998 Oct 5. PMID 9767082
  2. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables enzyme inhibitor activity IEA
Inferred from Electronic Annotation
more info
  
enables pectinesterase activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall modification IEA
Inferred from Electronic Annotation
more info
  
involved_in pectin catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
pectinesterase family protein
NP_188047.1
  • ATPMEPCRC; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectin methylesterase 1 (TAIR:AT1G53840.1); Has 4699 Blast hits to 3111 proteins in 352 species: Archae - 11; Bacteria - 646; Metazoa - 6; Fungi - 210; Plants - 3801; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    4766905..4769936 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112288.2 → NP_188047.1  pectinesterase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188047.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LUL8
    UniProtKB/TrEMBL
    A0A178VKY7
    Conserved Domains (2) summary
    PLN02314
    Location:450 → 961
    PLN02314; pectinesterase
    cd15798
    Location:274 → 435
    PMEI-like_3; Uncharacterized subfamily of plant invertase/pectin methylesterase inhibitor domains
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LUL8.1

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