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CID4 CTC-interacting domain 4 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820615, updated on 18-Sep-2024

Summary

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Official Symbol
CID4
Official Full Name
CTC-interacting domain 4
Primary source
TAIR:AT3G14010
Locus tag
AT3G14010
See related
Araport:AT3G14010
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
CTC-interacting domain 4
Summary
hydroxyproline-rich glycoprotein family protein, similar to Mrs16p (GI:2737884) (Saccharomyces cerevisiae); weak similarity to ataxin-2 related protein (GI:1679686) (Homo sapiens). Included in a family of CTC interacting domain proteins found to interact with PAB2.
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Genomic context

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See CID4 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
15
Sequence:
Chromosome: 3; NC_003074.8 (4636063..4641149)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene dentin sialophosphoprotein, putative (DUF1296) Neighboring gene DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein Neighboring gene ncRNA Neighboring gene nuclear factor Y, subunit A6 Neighboring gene miscRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The ATXN2 Orthologs CID3 and CID4, Act Redundantly to In-Fluence Developmental Pathways throughout the Life Cycle of Arabidopsis thaliana. López-Juárez ZM, et al. Int J Mol Sci, 2021 Mar 17. PMID 33802796, Free PMC Article
  2. Four distinct classes of proteins as interaction partners of the PABC domain of Arabidopsis thaliana Poly(A)-binding proteins. Bravo J, et al. Mol Genet Genomics, 2005 Feb. PMID 15650869
  3. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
  4. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
  5. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The ATXN2 Orthologs CID3 and CID4, Act Redundantly to In-Fluence Developmental Pathways throughout the Life Cycle of Arabidopsis thaliana.
    Title: The ATXN2 Orthologs CID3 and CID4, Act Redundantly to In-Fluence Developmental Pathways throughout the Life Cycle of Arabidopsis thaliana.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001084681.1
NM_001084682.1
NM_001202957.1
NM_001338097.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables mRNA binding HDA PubMed 
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
CTC-interacting domain 4
NP_001078150.1
  • CTC-interacting domain 4 (CID4); FUNCTIONS IN: protein binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LsmAD domain (InterPro:IPR009604), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: CTC-interacting domain 3 (TAIR:AT1G54170.1); Has 13147 Blast hits to 6513 proteins in 670 species: Archae - 9; Bacteria - 1458; Metazoa - 3492; Fungi - 1697; Plants - 664; Viruses - 94; Other Eukaryotes - 5733 (source: NCBI BLink).
NP_001078151.1
  • CTC-interacting domain 4 (CID4); FUNCTIONS IN: protein binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LsmAD domain (InterPro:IPR009604), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: CTC-interacting domain 3 (TAIR:AT1G54170.1); Has 13157 Blast hits to 6515 proteins in 672 species: Archae - 9; Bacteria - 1467; Metazoa - 3492; Fungi - 1698; Plants - 664; Viruses - 94; Other Eukaryotes - 5733 (source: NCBI BLink).
NP_001189886.1
  • CTC-interacting domain 4 (CID4); FUNCTIONS IN: protein binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LsmAD domain (InterPro:IPR009604), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: CTC-interacting domain 3 (TAIR:AT1G54170.1).
NP_566471.1
  • CTC-interacting domain 4 (CID4); CONTAINS InterPro DOMAIN/s: LsmAD domain (InterPro:IPR009604), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: CTC-interacting domain 3 (TAIR:AT1G54170.1); Has 13166 Blast hits to 6516 proteins in 672 species: Archae - 9; Bacteria - 1476; Metazoa - 3492; Fungi - 1698; Plants - 664; Viruses - 94; Other Eukaryotes - 5733 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    4636063..4641149
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112255.4 → NP_566471.1  CTC-interacting domain 4 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566471.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q94AM9, Q9LVJ8
    UniProtKB/TrEMBL
    A0A654FH16
    Conserved Domains (3) summary
    COG5180
    Location:129 → 549
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    pfam06741
    Location:206 → 270
    LsmAD; LsmAD domain
    pfam14438
    Location:47 → 126
    SM-ATX; Ataxin 2 SM domain

  2. NM_001202957.1 → NP_001189886.1  CTC-interacting domain 4 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189886.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654FH16, F4JEN1
    Conserved Domains (3) summary
    COG5180
    Location:129 → 547
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    pfam06741
    Location:206 → 270
    LsmAD; LsmAD domain
    pfam14438
    Location:47 → 126
    SM-ATX; Ataxin 2 SM domain

  3. NM_001338097.1 → NP_001325470.1  CTC-interacting domain 4 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LLC0, A0A5S9XCG8

  4. NM_001084681.1 → NP_001078150.1  CTC-interacting domain 4 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078150.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q94AM9, Q9LVJ8
    UniProtKB/TrEMBL
    A0A654FH16
    Conserved Domains (3) summary
    COG5180
    Location:129 → 549
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    pfam06741
    Location:206 → 270
    LsmAD; LsmAD domain
    pfam14438
    Location:47 → 126
    SM-ATX; Ataxin 2 SM domain

  5. NM_001084682.1 → NP_001078151.1  CTC-interacting domain 4 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078151.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q94AM9, Q9LVJ8
    UniProtKB/TrEMBL
    A0A654FH16
    Conserved Domains (3) summary
    COG5180
    Location:129 → 549
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    pfam06741
    Location:206 → 270
    LsmAD; LsmAD domain
    pfam14438
    Location:47 → 126
    SM-ATX; Ataxin 2 SM domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q94AM9.1

Gene LinkOut

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