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sks13 SKU5 similar 13 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820540, updated on 18-Sep-2024

Summary

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Official Symbol
sks13
Official Full Name
SKU5 similar 13
Primary source
TAIR:AT3G13400
Locus tag
AT3G13400
See related
Araport:AT3G13400
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
SKU5 similar 13; SKU5 similar 13
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Genomic context

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See sks13 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Sequence:
Chromosome: 3; NC_003074.8 (4354923..4357482)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene BRI1-like 3 Neighboring gene SKU5 similar 11 Neighboring gene miscRNA Neighboring gene uncharacterized protein Neighboring gene Defensin-like (DEFL) family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Pollen-specific gene SKU5-SIMILAR 13 enhances growth of pollen tubes in the transmitting tract in Arabidopsis. Zhang MJ, et al. J Exp Bot, 2022 Jan 27. PMID 34626184
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_001338046.1
NM_112185.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of pollen tube growth IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in plant-type cell wall IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
SKU5 similar 13
NP_001319540.1
  • SKU5 similar 13 (sks13); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKU5 similar 14 (TAIR:AT1G55560.1); Has 5231 Blast hits to 5185 proteins in 974 species: Archae - 4; Bacteria - 1633; Metazoa - 272; Fungi - 1906; Plants - 1265; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    4354923..4357482
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001338046.1 → NP_001319540.1  SKU5 similar 13 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VFS1, A0A5S9XC92, A0A654FGX9, Q9LJF1
    Conserved Domains (1) summary
    PLN02354
    Location:1 → 551
    PLN02354; copper ion binding / oxidoreductase

  2. NM_112185.3 → NP_187948.1  SKU5 similar 13 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187948.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VFS1, A0A5S9XC92, A0A654FGX9, Q9LJF1
    Conserved Domains (1) summary
    PLN02354
    Location:1 → 551
    PLN02354; copper ion binding / oxidoreductase
Nucleotide Protein
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