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sks11 SKU5 similar 11 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820539, updated on 18-Sep-2024

Summary

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Official Symbol
sks11
Official Full Name
SKU5 similar 11
Primary source
TAIR:AT3G13390
Locus tag
AT3G13390
See related
Araport:AT3G13390
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
SKU5 similar 11; SKU5 similar 11
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Genomic context

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See sks11 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (4350936..4353396, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene formin-like protein Neighboring gene ncRNA Neighboring gene BRI1-like 3 Neighboring gene SKU5 similar 13 Neighboring gene miscRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_112184.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
SKU5 similar 11
NP_187947.1
  • SKU5 similar 11 (sks11); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKU5 similar 12 (TAIR:AT1G55570.1); Has 5403 Blast hits to 5363 proteins in 1022 species: Archae - 18; Bacteria - 1817; Metazoa - 269; Fungi - 1904; Plants - 1258; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    4350936..4353396 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112184.4 → NP_187947.1  SKU5 similar 11 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187947.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V873, A0A178WGX2, A0A384KMQ0, A0A5S9WM50, Q9LJF2
    Conserved Domains (1) summary
    PLN02354
    Location:24 → 553
    PLN02354; copper ion binding / oxidoreductase
Nucleotide Protein
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