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Chaperone DnaJ-domain superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820531, updated on 18-Sep-2024

Summary

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Official Full Name
Chaperone DnaJ-domain superfamily protein
Primary source
TAIR:AT3G13310
Locus tag
AT3G13310
See related
Araport:AT3G13310
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
DJC66; DNA J protein C66
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Genomic context

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Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_003074.8 (4310544..4311629, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene varicose-like protein Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene cation exchanger 2 Neighboring gene proteasome activating protein 200

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of chloroplast J proteins. Chiu CC, et al. PLoS One, 2013. PMID 23894646, Free PMC Article
  2. Integrative Analysis from the Epigenome to Translatome Uncovers Patterns of Dominant Nuclear Regulation during Transient Stress. Lee TA, et al. Plant Cell, 2019 Nov. PMID 31519798, Free PMC Article
  3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_112176.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cellular response to hypoxia HEP PubMed 
Component Evidence Code Pubs
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Chaperone DnaJ-domain superfamily protein
NP_187939.1
  • Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT2G17880.1); Has 19059 Blast hits to 19056 proteins in 3143 species: Archae - 142; Bacteria - 8678; Metazoa - 3049; Fungi - 1540; Plants - 1805; Viruses - 5; Other Eukaryotes - 3840 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    4310544..4311629 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112176.2 → NP_187939.1  Chaperone DnaJ-domain superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187939.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VEF7, A0A5S9XBX0, Q9LTT7
    Conserved Domains (1) summary
    pfam00226
    Location:64 → 123
    DnaJ; DnaJ domain
Nucleotide Protein
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