U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CBS domain-containing protein / transporter associated domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820495, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
CBS domain-containing protein / transporter associated domain-containing protein
Primary source
TAIR:AT3G13070
Locus tag
AT3G13070
See related
Araport:AT3G13070
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 3
Exon count:
14
Sequence:
Chromosome: 3; NC_003074.8 (4191237..4195471, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene evolutionarily conserved C-terminal region 5 Neighboring gene ncRNA Neighboring gene Polyketide cyclase/dehydrase and lipid transport superfamily protein Neighboring gene STRUBBELIG-receptor family 4 Neighboring gene uncharacterized protein Neighboring gene multidrug resistance-associated protein 3 Neighboring gene multidrug resistance-associated protein 8

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Two magnesium transporters in the chloroplast inner envelope essential for thylakoid biogenesis in Arabidopsis. Zhang B, et al. New Phytol, 2022 Oct. PMID 35776059
  2. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article
  3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help
NM_112146.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables flavin adenine dinucleotide binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within magnesium ion transport IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast envelope HDA PubMed 
located_in chloroplast inner membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytosol HDA PubMed 
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
CBS domain-containing protein / transporter associated domain-containing protein
NP_187914.1
  • CBS domain-containing protein / transporter associated domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF21 (InterPro:IPR002550), Transporter-associated domain (InterPro:IPR005170), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein / transporter associated domain-containing protein (TAIR:AT1G55930.1); Has 15808 Blast hits to 15803 proteins in 2590 species: Archae - 162; Bacteria - 11531; Metazoa - 244; Fungi - 136; Plants - 197; Viruses - 0; Other Eukaryotes - 3538 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    4191237..4195471 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112146.3 → NP_187914.1  CBS domain-containing protein / transporter associated domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187914.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LK65
    UniProtKB/TrEMBL
    A0A178VB23, A0A5S9XD09
    Conserved Domains (4) summary
    COG0517
    Location:355 → 474
    CBS; CBS domain [Signal transduction mechanisms]
    cd04590
    Location:363 → 476
    CBS_pair_CorC_HlyC_assoc; This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in ...
    pfam01595
    Location:177 → 340
    DUF21; Domain of unknown function DUF21
    pfam03471
    Location:499 → 604
    CorC_HlyC; Transporter associated domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LK65.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools