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hAT transposon superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820489, updated on 18-Sep-2024

Summary

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Official Full Name
hAT transposon superfamily protein
Primary source
TAIR:AT3G13030
Locus tag
AT3G13030
See related
Araport:AT3G13030
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MGH6.16
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Genomic context

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Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (4169541..4172122, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene hAT transposon superfamily protein Neighboring gene hAT transposon superfamily protein Neighboring gene myb-like HTH transcriptional regulator family protein Neighboring gene Major facilitator superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001035608.2
NM_001161140.1
NM_001338020.1
NM_112140.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
hAT transposon superfamily protein
NP_001030685.1
  • hAT transposon superfamily protein; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily protein (TAIR:AT3G13020.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_001154612.1
  • hAT transposon superfamily protein; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily protein (TAIR:AT3G13020.1); Has 625 Blast hits to 607 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 623; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_187909.1
  • hAT transposon superfamily protein; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily protein (TAIR:AT3G13020.1); Has 625 Blast hits to 607 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 623; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    4169541..4172122 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001338021.1 → NP_001326385.1  hAT transposon superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LP43

  2. NM_001035608.2 → NP_001030685.1  hAT transposon superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001030685.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VMD6, A0A384LQ23, Q9LDS0
    Conserved Domains (2) summary
    pfam04937
    Location:91 → 240
    DUF659; Protein of unknown function (DUF 659)
    pfam05699
    Location:458 → 526
    Dimer_Tnp_hAT; hAT family C-terminal dimerization region

  3. NM_001338020.1 → NP_001326386.1  hAT transposon superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VMD6, A0A384LQ23, Q9LDS0
    Conserved Domains (2) summary
    pfam04937
    Location:91 → 240
    DUF659; Protein of unknown function (DUF 659)
    pfam05699
    Location:458 → 526
    Dimer_Tnp_hAT; hAT family C-terminal dimerization region

  4. NM_112140.4 → NP_187909.1  hAT transposon superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187909.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VMD6, A0A384LQ23, Q9LDS0
    Conserved Domains (2) summary
    pfam04937
    Location:91 → 240
    DUF659; Protein of unknown function (DUF 659)
    pfam05699
    Location:458 → 526
    Dimer_Tnp_hAT; hAT family C-terminal dimerization region

  5. NM_001161140.1 → NP_001154612.1  hAT transposon superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154612.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VMD6, A0A384LQ23, Q9LDS0
    Conserved Domains (2) summary
    pfam04937
    Location:91 → 240
    DUF659; Protein of unknown function (DUF 659)
    pfam05699
    Location:458 → 526
    Dimer_Tnp_hAT; hAT family C-terminal dimerization region
Nucleotide Protein
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