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emb2742 CTP synthase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820447, updated on 18-Sep-2024

Summary

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Official Symbol
emb2742
Official Full Name
CTP synthase family protein
Primary source
TAIR:AT3G12670
Locus tag
AT3G12670
See related
Araport:AT3G12670
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
embryo defective 2742
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Genomic context

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See emb2742 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
22
Sequence:
Chromosome: 3; NC_003074.8 (4019031..4024357, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene RNA binding (RRM/RBD/RNP motifs) family protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene FASCICLIN-like arabinogalactan protein 14 precursor Neighboring gene floral homeotic protein (HUA1) Neighboring gene Acid phosphatase/vanadium-dependent haloperoxidase-related protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. CTP Synthase 2 From Arabidopsis thaliana Is Required for Complete Embryo Development. Hickl D, et al. Front Plant Sci, 2021. PMID 33936137, Free PMC Article
  2. Characterization of filament-forming CTP synthases from Arabidopsis thaliana. Daumann M, et al. Plant J, 2018 Oct. PMID 30030857, Free PMC Article
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_112102.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables CTP synthase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in 'de novo' CTP biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within embryo development ending in seed dormancy IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within embryo development ending in seed dormancy NAS
Non-traceable Author Statement
more info
  
involved_in response to auxin IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
CTP synthase family protein
NP_187873.1
  • embryo defective 2742 (emb2742); FUNCTIONS IN: CTP synthase activity, catalytic activity; INVOLVED IN: response to cadmium ion, embryo development ending in seed dormancy; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), CTP synthase (InterPro:IPR004468), CTP synthase, N-terminal (InterPro:IPR017456), Glutamine amidotransferase type 1 (InterPro:IPR017926); BEST Arabidopsis thaliana protein match is: CTP synthase family protein (TAIR:AT1G30820.1); Has 10841 Blast hits to 10805 proteins in 2914 species: Archae - 237; Bacteria - 5484; Metazoa - 258; Fungi - 230; Plants - 171; Viruses - 0; Other Eukaryotes - 4461 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    4019031..4024357 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112102.3 → NP_187873.1  CTP synthase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187873.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VDI5, A0A384K8P2, A0A7G2EK31, Q9LTW8
    Conserved Domains (1) summary
    PLN02327
    Location:1 → 555
    PLN02327; CTP synthase
Nucleotide Protein
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