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RNA binding (RRM/RBD/RNP motifs) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820444, updated on 18-Sep-2024

Summary

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Official Full Name
RNA binding (RRM/RBD/RNP motifs) family protein
Primary source
TAIR:AT3G12640
Locus tag
AT3G12640
See related
Araport:AT3G12640
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
10
Sequence:
Chromosome: 3; NC_003074.8 (4014047..4017869)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Protein phosphatase 2C family protein Neighboring gene A20/AN1-like zinc finger family protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene CTP synthase family protein Neighboring gene FASCICLIN-like arabinogalactan protein 14 precursor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001338005.1
NM_112099.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables poly(A) binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of mRNA stability IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RNA binding (RRM/RBD/RNP motifs) family protein
NP_566430.3
  • RNA binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: mRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Splicing factor PWI (InterPro:IPR002483); BEST Arabidopsis thaliana protein match is: RNA binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G24350.1); Has 3110 Blast hits to 3077 proteins in 726 species: Archae - 48; Bacteria - 800; Metazoa - 1243; Fungi - 266; Plants - 328; Viruses - 0; Other Eukaryotes - 425 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    4014047..4017869
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001338003.1 → NP_001325954.1  RNA binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VKF6, A0A654F7K2, Q9LTX1
    Conserved Domains (3) summary
    smart00360
    Location:505 → 576
    RRM; RNA recognition motif
    TIGR01622
    Location:450 → 596
    SF-CC1; splicing factor, CC1-like family
    cl02562
    Location:23 → 86
    PWI; PWI domain

  2. NM_001338004.1 → NP_001325953.1  RNA binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VKF6, A0A654F7K2, Q9LTX1
    Conserved Domains (3) summary
    smart00360
    Location:505 → 576
    RRM; RNA recognition motif
    TIGR01622
    Location:450 → 596
    SF-CC1; splicing factor, CC1-like family
    cl02562
    Location:23 → 86
    PWI; PWI domain

  3. NM_112099.3 → NP_566430.3  RNA binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566430.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2EHX7, F4J9U9
    Conserved Domains (3) summary
    smart00360
    Location:481 → 552
    RRM; RNA recognition motif
    COG0724
    Location:472 → 561
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cl02562
    Location:23 → 86
    PWI; PWI domain

  4. NM_001338005.1 → NP_001325955.1  RNA binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VKF6, A0A1I9LMT6
Nucleotide Protein
Heading Accession and Version

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