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TRFL9 TRF-like 9 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820436, updated on 18-Sep-2024

Summary

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Official Symbol
TRFL9
Official Full Name
TRF-like 9
Primary source
TAIR:AT3G12560
Locus tag
AT3G12560
See related
Araport:AT3G12560
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATTBP2; TELOMERIC DNA-BINDING PROTEIN 2; TRF-like 9
Summary
Encodes a telomeric DNA-binding protein.
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Genomic context

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See TRFL9 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
9
Sequence:
Chromosome: 3; NC_003074.8 (3981880..3985625, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547) Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Neighboring gene XH/XS domain-containing protein Neighboring gene FYD Neighboring gene heat shock protein 70

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. AtTBP2 and AtTRP2 in Arabidopsis encode proteins that bind plant telomeric DNA and induce DNA bending in vitro. Hwang MG, et al. Mol Genet Genomics, 2005 Mar. PMID 15688221
  2. A C-terminal Myb extension domain defines a novel family of double-strand telomeric DNA-binding proteins in Arabidopsis. Karamysheva ZN, et al. J Biol Chem, 2004 Nov 12. PMID 15364931
  3. An armadillo-domain protein participates in a telomerase interaction network. Dokládal L, et al. Plant Mol Biol, 2018 Jul. PMID 29948659
  4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. AtTBP2 encodes a protein that binds plant telomeric DNA and induces DNA bending in vitro.
    Title: AtTBP2 and AtTRP2 in Arabidopsis encode proteins that bind plant telomeric DNA and induce DNA bending in vitro.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001338001.1
NM_112091.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA binding, bending IDA
Inferred from Direct Assay
more info
 PubMed 
enables telomeric DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
TRF-like 9
NP_187862.1
  • TRF-like 9 (TRFL9); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: telomeric DNA binding protein 1 (TAIR:AT5G13820.1); Has 334 Blast hits to 327 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 6; Plants - 306; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    3981880..3985625 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112091.4 → NP_187862.1  TRF-like 9 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187862.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q5QKS3, Q9C7B1, Q9LHB0
    UniProtKB/TrEMBL
    A0A178VNC8, A0A5S9XCU8
    Conserved Domains (1) summary
    cd11660
    Location:510 → 560
    SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

  2. NM_001338001.1 → NP_001327482.1  TRF-like 9 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q5QKS3, Q9C7B1, Q9LHB0
    UniProtKB/TrEMBL
    A0A178VNC8, A0A5S9XCU8
    Conserved Domains (1) summary
    cd11660
    Location:510 → 560
    SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9C7B1.1

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