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PSF2 PSF2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820432, updated on 18-Sep-2024

Summary

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Official Symbol
PSF2
Official Full Name
PSF2
Primary source
TAIR:AT3G12530
Locus tag
AT3G12530
See related
Araport:AT3G12530
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See PSF2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
10
Sequence:
Chromosome: 3; NC_003074.8 (3972180..3974440, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene MADS-box family protein Neighboring gene ncRNA Neighboring gene sulfate transporter 4;2 Neighboring gene ncRNA Neighboring gene ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547) Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Neighboring gene XH/XS domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001035603.1
NM_001337995.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
PSF2
NP_001030680.1
  • PSF2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: DNA replication; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GINS complex (InterPro:IPR021151), GINS complex, subunit Psf2 (InterPro:IPR007257), GINS complex, subunit Psf2, subgroup (InterPro:IPR016906); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_001319531.1
  • PSF2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: DNA replication; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GINS complex (InterPro:IPR021151), GINS complex, subunit Psf2 (InterPro:IPR007257), GINS complex, subunit Psf2, subgroup (InterPro:IPR016906); Has 396 Blast hits to 382 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 128; Fungi - 167; Plants - 52; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    3972180..3974440 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112088.3 → NP_187859.2  PSF2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187859.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q5EAG9, Q9C7A8, Q9LHF6
    UniProtKB/TrEMBL
    A0A178VED3, A0A7G2ENF2
    Conserved Domains (2) summary
    cd11712
    Location:66 → 181
    GINS_A_psf2; Alpha-helical domain of GINS complex protein Psf2 (partner of Sld5 2)
    cd21694
    Location:13 → 74
    GINS_B_Psf2; beta-strand (B) domain of GINS complex protein Psf2

  2. NM_001337996.1 → NP_001326331.1  PSF2 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LNY4

  3. NM_001337995.1 → NP_001319531.1  PSF2 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q5EAG9, Q9C7A8, Q9LHF6
    UniProtKB/TrEMBL
    A0A178VED3, A0A7G2ENF2
    Conserved Domains (2) summary
    cd11712
    Location:66 → 181
    GINS_A_psf2; Alpha-helical domain of GINS complex protein Psf2 (partner of Sld5 2)
    cd21694
    Location:13 → 74
    GINS_B_Psf2; beta-strand (B) domain of GINS complex protein Psf2

  4. NM_001035603.1 → NP_001030680.1  PSF2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001030680.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2ENF2, F4J9T0
    Conserved Domains (1) summary
    cd11712
    Location:47 → 162
    GINS_A_psf2; Alpha-helical domain of GINS complex protein Psf2 (partner of Sld5 2)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9C7A8.2

Gene LinkOut

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