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scpl16 serine carboxypeptidase-like 16 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820402, updated on 18-Sep-2024

Summary

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Official Symbol
scpl16
Official Full Name
serine carboxypeptidase-like 16
Primary source
TAIR:AT3G12220
Locus tag
AT3G12220
See related
Araport:AT3G12220
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
serine carboxypeptidase-like 16
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Genomic context

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See scpl16 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
14
Sequence:
Chromosome: 3; NC_003074.8 (3896207..3899019, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene golgin family A protein Neighboring gene NIMA-related kinase 7 Neighboring gene serine carboxypeptidase-like 17 Neighboring gene DNA binding protein Neighboring gene serine carboxypeptidase-like 14 Neighboring gene serine carboxypeptidase-like 15

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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NM_001337982.1
NM_001337983.1
NM_112058.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables serine-type carboxypeptidase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
serine carboxypeptidase-like 16
NP_566414.3
  • serine carboxypeptidase-like 16 (scpl16); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 14 (TAIR:AT3G12230.1); Has 3960 Blast hits to 3875 proteins in 462 species: Archae - 0; Bacteria - 498; Metazoa - 629; Fungi - 839; Plants - 1565; Viruses - 0; Other Eukaryotes - 429 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    3896207..3899019 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112058.4 → NP_566414.3  serine carboxypeptidase-like 16 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566414.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9C7D4, Q9LHI4
    UniProtKB/TrEMBL
    A0A5S9XBM1, A0A654F7P3
    Conserved Domains (1) summary
    cl08270
    Location:18 → 435
    Peptidase_S10; Serine carboxypeptidase

  2. NM_001337982.1 → NP_001327319.1  serine carboxypeptidase-like 16 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LRY3, A0A5S9XBM1, A0A654F7P3

  3. NM_001337983.1 → NP_001327318.1  serine carboxypeptidase-like 16 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LRY2, A0A5S9XBM1, A0A654F7P3
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9C7D4.1

Gene LinkOut

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