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TET6 tetraspanin6 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820383, updated on 18-Sep-2024

Summary

Official Symbol
TET6
Official Full Name
tetraspanin6
Primary source
TAIR:AT3G12090
Locus tag
AT3G12090
See related
Araport:AT3G12090
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
tetraspanin6
Summary
Member of TETRASPANIN family
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Genomic context

See TET6 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (3852125..3853866, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Aha1 domain-containing protein Neighboring gene trichome birefringence-like protein (DUF828) Neighboring gene RAB geranylgeranyl transferase beta subunit 2 Neighboring gene GTP-binding family protein Neighboring gene Cation efflux family protein Neighboring gene actin-11

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

NM_112044.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in auxin-activated signaling pathway IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within organ growth IGI
Inferred from Genetic Interaction
more info
PubMed 

General protein information

Preferred Names
tetraspanin6
NP_566411.2
  • tetraspanin6 (TET6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: aging; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: tetraspanin5 (TAIR:AT4G23410.1); Has 433 Blast hits to 431 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 429; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    3852125..3853866 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112044.4NP_566411.2  tetraspanin6 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566411.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8L930, Q9C7C1, Q9LH57
    UniProtKB/TrEMBL
    A0A178VCX6, A0A178VEY7, A0A5S9XBI1
    Conserved Domains (1) summary
    pfam00335
    Location:5220
    Tetraspannin; Tetraspanin family