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RGTB2 RAB geranylgeranyl transferase beta subunit 2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820381, updated on 18-Sep-2024

Summary

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Official Symbol
RGTB2
Official Full Name
RAB geranylgeranyl transferase beta subunit 2
Primary source
TAIR:AT3G12070
Locus tag
AT3G12070
See related
Araport:AT3G12070
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtRGTB2; RAB geranylgeranyl transferase beta subunit 2
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Genomic context

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See RGTB2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
10
Sequence:
Chromosome: 3; NC_003074.8 (3844772..3847586, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene DNA-3-methyladenine glycosylase (MAG) Neighboring gene Aha1 domain-containing protein Neighboring gene trichome birefringence-like protein (DUF828) Neighboring gene GTP-binding family protein Neighboring gene tetraspanin6 Neighboring gene Cation efflux family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Rab geranylgeranyl transferase β subunit is essential for male fertility and tip growth in Arabidopsis. Gutkowska M, et al. J Exp Bot, 2015 Jan. PMID 25316062, Free PMC Article
  2. Arabidopsis Rab Geranylgeranyltransferases Demonstrate Redundancy and Broad Substrate Specificity in Vitro. Shi W, et al. J Biol Chem, 2016 Jan 15. PMID 26589801, Free PMC Article
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_001337972.1
NM_001337973.1
NM_112041.3
NM_180236.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables Rab geranylgeranyltransferase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables Rab geranylgeranyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in pollen development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in protein geranylgeranylation IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in root development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
part_of Rab-protein geranylgeranyltransferase complex IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
RAB geranylgeranyl transferase beta subunit 2
NP_187814.1
  • RAB geranylgeranyl transferase beta subunit 2 (RGTB2); FUNCTIONS IN: catalytic activity; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: RAB geranylgeranyl transferase beta subunit 1 (TAIR:AT5G12210.1); Has 1529 Blast hits to 1352 proteins in 256 species: Archae - 0; Bacteria - 31; Metazoa - 548; Fungi - 456; Plants - 198; Viruses - 0; Other Eukaryotes - 296 (source: NCBI BLink).
NP_850567.1
  • RAB geranylgeranyl transferase beta subunit 2; FUNCTIONS IN: catalytic activity; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: RAB geranylgeranyl transferase beta subunit 1 (TAIR:AT5G12210.1); Has 1529 Blast hits to 1352 proteins in 256 species: Archae - 0; Bacteria - 31; Metazoa - 548; Fungi - 456; Plants - 198; Viruses - 0; Other Eukaryotes - 296 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    3844772..3847586 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_180236.4 → NP_850567.1  RAB geranylgeranyl transferase beta subunit 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850567.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LFX5, Q9LHL5
    UniProtKB/TrEMBL
    A0A178VBX3
    Conserved Domains (2) summary
    PLN03201
    Location:1 → 316
    PLN03201; RAB geranylgeranyl transferase beta-subunit; Provisional
    cd02894
    Location:5 → 291
    GGTase-II; Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying ...

  2. NM_112041.3 → NP_187814.1  RAB geranylgeranyl transferase beta subunit 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187814.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LFX5, Q9LHL5
    UniProtKB/TrEMBL
    A0A178VBX3
    Conserved Domains (2) summary
    PLN03201
    Location:1 → 316
    PLN03201; RAB geranylgeranyl transferase beta-subunit; Provisional
    cd02894
    Location:5 → 291
    GGTase-II; Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying ...

  3. NM_001337972.1 → NP_001327836.1  RAB geranylgeranyl transferase beta subunit 2 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LFX5, Q9LHL5
    UniProtKB/TrEMBL
    A0A178VBX3

  4. NM_001337973.1 → NP_001327837.1  RAB geranylgeranyl transferase beta subunit 2 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LTJ2
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LHL5.1

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