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LETM1-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820329, updated on 18-Sep-2024

Summary

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Official Full Name
LETM1-like protein
Primary source
TAIR:AT3G11560
Locus tag
AT3G11560
See related
Araport:AT3G11560
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
18
Sequence:
Chromosome: 3; NC_003074.8 (3639412..3646061)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene Uncharacterized protein family (UPF0497) Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene TRICHOME BIREFRINGENCE-LIKE 8 Neighboring gene AP2/B3-like transcriptional factor family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis. Froehlich JE, et al. J Proteome Res, 2003 Jul-Aug. PMID 12938931
  2. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article
  3. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
  4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_001084667.1
NM_001337937.1
NM_111989.4
NM_180668.3
NM_180669.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast envelope HDA PubMed 
located_in cytosol HDA PubMed 
located_in mitochondrial inner membrane IEA
Inferred from Electronic Annotation
more info
  
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
LETM1-like protein
NP_001078136.1
  • LETM1-like protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LETM1-like (InterPro:IPR011685); BEST Arabidopsis thaliana protein match is: LETM1-like protein (TAIR:AT5G06220.2); Has 461 Blast hits to 445 proteins in 157 species: Archae - 0; Bacteria - 8; Metazoa - 136; Fungi - 162; Plants - 104; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).
NP_187763.3
  • LETM1-like protein; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LETM1-like (InterPro:IPR011685); BEST Arabidopsis thaliana protein match is: LETM1-like protein (TAIR:AT5G06220.2); Has 461 Blast hits to 445 proteins in 157 species: Archae - 0; Bacteria - 8; Metazoa - 136; Fungi - 162; Plants - 104; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).
NP_850999.1
  • LETM1-like protein; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: LETM1-like protein (TAIR:AT5G06220.2); Has 56 Blast hits to 54 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_851000.1
  • LETM1-like protein; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LETM1-like (InterPro:IPR011685); BEST Arabidopsis thaliana protein match is: LETM1-like protein (TAIR:AT5G06220.2); Has 461 Blast hits to 445 proteins in 157 species: Archae - 0; Bacteria - 8; Metazoa - 136; Fungi - 162; Plants - 104; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    3639412..3646061
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_180669.3 → NP_851000.1  LETM1-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_851000.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XB36, A0A654F645, Q8H0W4
    Conserved Domains (1) summary
    pfam07766
    Location:760 → 857
    LETM1; LETM1-like protein

  2. NM_111989.4 → NP_187763.3  LETM1-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187763.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XB36, A0A654F645, Q8H0W4
    Conserved Domains (1) summary
    pfam07766
    Location:760 → 857
    LETM1; LETM1-like protein

  3. NM_001084667.1 → NP_001078136.1  LETM1-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078136.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XB36, A0A654F645, Q8H0W4
    Conserved Domains (1) summary
    pfam07766
    Location:760 → 857
    LETM1; LETM1-like protein

  4. NM_001337937.1 → NP_001326547.1  LETM1-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8VYL0

  5. NM_180668.3 → NP_850999.1  LETM1-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850999.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8VYL0
    Conserved Domains (1) summary
    COG0419
    Location:505 → 609
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
Nucleotide Protein
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