U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Vacuolar protein sorting 55 (VPS55) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820326, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
Vacuolar protein sorting 55 (VPS55) family protein
Primary source
TAIR:AT3G11530
Locus tag
AT3G11530
See related
Araport:AT3G11530
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 3
Exon count:
4
Sequence:
Chromosome: 3; NC_003074.8 (3628530..3630536, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene Uncharacterized protein family (UPF0497)

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
  2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help
NM_001337936.1
NM_111986.3
NM_202556.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in plant-type vacuole HDA PubMed 

General protein information

Go to the top of the page Help
Preferred Names
Vacuolar protein sorting 55 (VPS55) family protein
NP_566391.1
  • Vacuolar protein sorting 55 (VPS55) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting 55 (InterPro:IPR007262); BEST Arabidopsis thaliana protein match is: Vacuolar protein sorting 55 (VPS55) family protein (TAIR:AT1G32410.5); Has 298 Blast hits to 298 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 62; Fungi - 139; Plants - 84; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
NP_974285.2
  • Vacuolar protein sorting 55 (VPS55) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting 55 (InterPro:IPR007262); BEST Arabidopsis thaliana protein match is: Vacuolar protein sorting 55 (VPS55) family protein (TAIR:AT1G32410.5); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    3628530..3630536 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_202556.3 → NP_974285.2  Vacuolar protein sorting 55 (VPS55) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974285.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VIM1, A0A384KMM9, F4J6B8, Q93Z28
    Conserved Domains (1) summary
    pfam04133
    Location:1 → 112
    Vps55; Vacuolar protein sorting 55

  2. NM_001337936.1 → NP_001325456.1  Vacuolar protein sorting 55 (VPS55) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VGR9, A0A1I9LLA6, A0A384LQK9
    Conserved Domains (1) summary
    pfam04133
    Location:1 → 91
    Vps55; Vacuolar protein sorting 55

  3. NM_111986.3 → NP_566391.1  Vacuolar protein sorting 55 (VPS55) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566391.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VIM1, A0A384KMM9, F4J6B8, Q93Z28
    Conserved Domains (1) summary
    pfam04133
    Location:1 → 112
    Vps55; Vacuolar protein sorting 55
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.