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PIRL9 plant intracellular ras group-related LRR 9 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820306, updated on 18-Sep-2024

Summary

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Official Symbol
PIRL9
Official Full Name
plant intracellular ras group-related LRR 9
Primary source
TAIR:AT3G11330
Locus tag
AT3G11330
See related
Araport:AT3G11330
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
plant intracellular ras group-related LRR 9
Summary
Encodes PIRL9, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction. PIRL1 (AT5G05850) and PIRL9 (AT3G11330) are genetically redundant and are required for differentiation of microspores into pollen.
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Genomic context

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See PIRL9 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (3551759..3554843, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Myb/SANT-like DNA-binding domain protein Neighboring gene Nucleotide-sugar transporter family protein Neighboring gene Phospholipid/glycerol acyltransferase family protein Neighboring gene UDP-Glycosyltransferase superfamily protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Effect of sporophytic PIRL9 genotype on post-meiotic expression of the Arabidopsis pirl1;pirl9 mutant pollen phenotype. Forsthoefel NR, et al. Planta, 2011 Feb. PMID 21140166
  2. PIRL1 and PIRL9, encoding members of a novel plant-specific family of leucine-rich repeat proteins, are essential for differentiation of microspores into pollen. Forsthoefel NR, et al. Planta, 2010 Oct. PMID 20697737
  3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_111967.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within microgametogenesis IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in microgametogenesis IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within pollen development IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in pollen development IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in cytosol HDA PubMed 

General protein information

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Preferred Names
plant intracellular ras group-related LRR 9
NP_187741.2
  • plant intracellular ras group-related LRR 9 (PIRL9); INVOLVED IN: pollen development, microgametogenesis; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 1 (TAIR:AT5G05850.1); Has 80076 Blast hits to 32245 proteins in 1215 species: Archae - 20; Bacteria - 6549; Metazoa - 31794; Fungi - 2648; Plants - 34170; Viruses - 12; Other Eukaryotes - 4883 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    3551759..3554843 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111967.4 → NP_187741.2  plant intracellular ras group-related LRR 9 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187741.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8VYG9, Q9C769
    UniProtKB/TrEMBL
    A0A5S9XCF8
    Conserved Domains (3) summary
    cd00116
    Location:205 → 397
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:202 → 222
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:360 → 420
    LRR_8; Leucine rich repeat
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8VYG9.1

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