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2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820289, updated on 18-Sep-2024

Summary

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Official Full Name
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Primary source
TAIR:AT3G11180
Locus tag
AT3G11180
See related
Araport:AT3G11180
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F11B9.11
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Genomic context

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Location:
chromosome: 3
Exon count:
5
Sequence:
Chromosome: 3; NC_003074.8 (3503917..3507113)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene fatty acid desaturase 7 Neighboring gene alfin-like 2 Neighboring gene SGNH hydrolase-type esterase superfamily protein Neighboring gene Paxneb protein-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis JASMONATE-INDUCED OXYGENASES down-regulate plant immunity by hydroxylation and inactivation of the hormone jasmonic acid. Caarls L, et al. Proc Natl Acad Sci U S A, 2017 Jun 13. PMID 28559313, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_001202929.1
NM_111954.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables jasmonic acid hydrolase IDA
Inferred from Direct Assay
more info
 PubMed 
enables jasmonic acid hydrolase IGI
Inferred from Genetic Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of defense response to insect IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of defense response to fungus IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within regulation of jasmonic acid mediated signaling pathway IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in regulation of jasmonic acid mediated signaling pathway IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NP_001189858.1
  • 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, iron ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT5G05600.1).
NP_187728.1
  • 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, iron ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT5G05600.1); Has 8772 Blast hits to 8716 proteins in 1011 species: Archae - 0; Bacteria - 1149; Metazoa - 114; Fungi - 1021; Plants - 4999; Viruses - 0; Other Eukaryotes - 1489 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    3503917..3507113
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111954.3 → NP_187728.1  2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187728.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SRM3
    UniProtKB/TrEMBL
    A0A178V579, A0A654F604
    Conserved Domains (1) summary
    PLN02393
    Location:42 → 400
    PLN02393; leucoanthocyanidin dioxygenase like protein

  2. NM_001202929.1 → NP_001189858.1  2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189858.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V579, F4J670
    Conserved Domains (3) summary
    PLN02393
    Location:42 → 389
    PLN02393; leucoanthocyanidin dioxygenase like protein
    pfam03171
    Location:251 → 349
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily
    pfam14226
    Location:95 → 202
    DIOX_N; non-haem dioxygenase in morphine synthesis N-terminal
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SRM3.1

Gene LinkOut

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