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tropomyosin [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820258, updated on 18-Sep-2024

Summary

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Official Full Name
tropomyosin
Primary source
TAIR:AT3G10880
Locus tag
AT3G10880
See related
Araport:AT3G10880
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
4
Sequence:
Chromosome: 3; NC_003074.8 (3405800..3407921)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Metallo-hydrolase/oxidoreductase superfamily protein Neighboring gene Cytochrome b-c1 complex, subunit 8 protein Neighboring gene methyl esterase 17 Neighboring gene Glycosyl hydrolase superfamily protein Neighboring gene Glycosyl hydrolase superfamily protein Neighboring gene RING/U-box superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001337903.1
NM_111925.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
tropomyosin
NP_187699.2
  • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G05180.1); Has 15699 Blast hits to 11378 proteins in 1134 species: Archae - 391; Bacteria - 2054; Metazoa - 6851; Fungi - 1354; Plants - 1096; Viruses - 119; Other Eukaryotes - 3834 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    3405800..3407921
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001337902.1 → NP_001327510.1  tropomyosin [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VBK7, A0A384L851, A0A7G2EP10, Q58FW3
    Conserved Domains (1) summary
    TIGR02169
    Location:148 → 310
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

  2. NM_001337901.1 → NP_001327511.1  tropomyosin [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LSJ2, A0A5S9XB57, Q9SG93
    Conserved Domains (1) summary
    TIGR02169
    Location:110 → 272
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

  3. NM_111925.4 → NP_187699.2  tropomyosin [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187699.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VBK7, A0A384L851, A0A7G2EP10, Q58FW3
    Conserved Domains (1) summary
    TIGR02169
    Location:148 → 310
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

  4. NM_001337903.1 → NP_001327509.1  tropomyosin [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LSJ2, A0A5S9XB57, Q9SG93
    Conserved Domains (1) summary
    TIGR02169
    Location:110 → 272
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
Nucleotide Protein
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