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NUDX26 nudix hydrolase homolog 26 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820231, updated on 18-Sep-2024

Summary

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Official Symbol
NUDX26
Official Full Name
nudix hydrolase homolog 26
Primary source
TAIR:AT3G10620
Locus tag
AT3G10620
See related
Araport:AT3G10620
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATNUDX26; nudix hydrolase homolog 26
Summary
Encodes a ppGpp pyrophosphohydrolase.
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Genomic context

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See NUDX26 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Sequence:
Chromosome: 3; NC_003074.8 (3320163..3321724)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene cationic amino acid transporter 7 Neighboring gene uncharacterized protein Neighboring gene Ribosomal S17 family protein Neighboring gene UDP-Glycosyltransferase superfamily protein Neighboring gene ncRNA Neighboring gene SNF7 family protein Neighboring gene nuclear pore complex protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Enzymatic and molecular characterization of Arabidopsis ppGpp pyrophosphohydrolase, AtNUDX26. Ito D, et al. Biosci Biotechnol Biochem, 2012. PMID 23221701
  2. Molecular characterization of organelle-type Nudix hydrolases in Arabidopsis. Ogawa T, et al. Plant Physiol, 2008 Nov. PMID 18815383, Free PMC Article
  3. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
  4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. molecular properties of ppGpp pyrophosphohydrolases in Arabidopsis
    Title: Enzymatic and molecular characterization of Arabidopsis ppGpp pyrophosphohydrolase, AtNUDX26.
Submit: New GeneRIF Correction

General gene information

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Homology

NM_111898.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables bis(5'-adenosyl)-pentaphosphatase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within nucleoside phosphate metabolic process IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
nudix hydrolase homolog 26
NP_187673.1
  • nudix hydrolase homolog 26 (NUDX26); CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase (InterPro:IPR020476), NUDIX hydrolase, conserved site (InterPro:IPR020084), NUDIX hydrolase domain (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 27 (TAIR:AT5G06340.1); Has 4741 Blast hits to 4739 proteins in 1213 species: Archae - 2; Bacteria - 2928; Metazoa - 13; Fungi - 1; Plants - 97; Viruses - 0; Other Eukaryotes - 1700 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    3320163..3321724
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111898.4 → NP_187673.1  nudix hydrolase homolog 26 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187673.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9CAF2, Q9LPN7
    UniProtKB/TrEMBL
    A0A178VJ84, A0A5S9XAW4
    Conserved Domains (1) summary
    cd03671
    Location:62 → 211
    Ap4A_hydrolase_plant_like; Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9CAF2.1

Gene LinkOut

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