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Nucleic acid-binding, OB-fold-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820170, updated on 18-Sep-2024

Summary

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Official Full Name
Nucleic acid-binding, OB-fold-like protein
Primary source
TAIR:AT3G10090
Locus tag
AT3G10090
See related
Araport:AT3G10090
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (3108789..3110094, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene FKBP-like peptidyl-prolyl cis-trans isomerase family protein Neighboring gene TBP-associated factor 12 Neighboring gene RmlC-like cupins superfamily protein Neighboring gene pseudo Neighboring gene Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. Giavalisco P, et al. Plant Mol Biol, 2005 Mar. PMID 15821981
  2. Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. Carroll AJ, et al. Mol Cell Proteomics, 2008 Feb. PMID 17934214
  3. Arabidopsis cell wall proteome defined using multidimensional protein identification technology. Bayer EM, et al. Proteomics, 2006 Jan. PMID 16287169
  4. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article
  5. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_111844.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
NOT located_in Golgi apparatus RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in cytosol HDA PubMed 
located_in cytosolic ribosome HDA PubMed 
part_of cytosolic small ribosomal subunit HDA PubMed 
located_in plant-type cell wall HDA PubMed 

General protein information

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Preferred Names
Nucleic acid-binding, OB-fold-like protein
NP_187620.1
  • Nucleic acid-binding, OB-fold-like protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S28e (InterPro:IPR000289); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT5G03850.1); Has 1066 Blast hits to 1066 proteins in 391 species: Archae - 235; Bacteria - 0; Metazoa - 333; Fungi - 148; Plants - 161; Viruses - 0; Other Eukaryotes - 189 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    3108789..3110094 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111844.5 → NP_187620.1  Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187620.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SR73
    UniProtKB/TrEMBL
    A0A178USI0, A0A5S9Y3C9, A0A654F6U3
    Conserved Domains (1) summary
    cd04457
    Location:6 → 64
    S1_S28E; S28E, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. S28E protein is a component of the 30S ribosomal subunit. S28E is highly conserved among archaea and eukaryotes. S28E may control ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SR73.1

Gene LinkOut

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Molecular Biology Databases
Research Materials