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MYB3R-3 myb domain protein 3r-3 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820094, updated on 18-Sep-2024

Summary

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Official Symbol
MYB3R-3
Official Full Name
myb domain protein 3r-3
Primary source
TAIR:AT3G09370
Locus tag
AT3G09370
See related
Araport:AT3G09370
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtMYB3R3; myb domain protein 3r-3; myb domain protein 3R3
Summary
putative c-myb-like transcription factor (MYB3R3) mRNA
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Genomic context

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See MYB3R-3 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
8
Sequence:
Chromosome: 3; NC_003074.8 (2879353..2882396)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Fes1A Neighboring gene Cyclin/Brf1-like TBP-binding protein Neighboring gene miscRNA Neighboring gene MIP18 family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage. Chen P, et al. Nat Commun, 2017 Sep 21. PMID 28935922, Free PMC Article
  2. The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family. Yanhui C, et al. Plant Mol Biol, 2006 Jan. PMID 16463103
  3. Transcriptional repression by MYB3R proteins regulates plant organ growth. Kobayashi K, et al. EMBO J, 2015 Aug 4. PMID 26069325, Free PMC Article
  4. DREAM complex suppresses DNA methylation maintenance genes and precludes DNA hypermethylation. Ning YQ, et al. Nat Plants, 2020 Aug. PMID 32661276
  5. A PXY-Mediated Transcriptional Network Integrates Signaling Mechanisms to Control Vascular Development in Arabidopsis. Smit ME, et al. Plant Cell, 2020 Feb. PMID 31806676, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001084658.2
NM_001337814.1
NM_111771.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables sequence-specific DNA binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables transcription cis-regulatory region binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within DNA damage response IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in negative regulation of DNA-templated transcription IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in negative regulation of cell population proliferation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in response to auxin IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to ethylene IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to jasmonic acid IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to salicylic acid IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
part_of DRM complex IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
myb domain protein 3r-3
NP_001078127.1
  • myb domain protein 3r-3 (MYB3R-3); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 3r-5 (TAIR:AT5G02320.2); Has 14047 Blast hits to 8583 proteins in 559 species: Archae - 0; Bacteria - 0; Metazoa - 1217; Fungi - 1118; Plants - 8582; Viruses - 6; Other Eukaryotes - 3124 (source: NCBI BLink).
NP_566350.1
  • myb domain protein 3r-3 (MYB3R-3); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 3r-5 (TAIR:AT5G02320.2); Has 12681 Blast hits to 8608 proteins in 562 species: Archae - 0; Bacteria - 0; Metazoa - 1169; Fungi - 1136; Plants - 7404; Viruses - 4; Other Eukaryotes - 2968 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    2879353..2882396
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001084658.2 → NP_001078127.1  myb domain protein 3r-3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078127.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XAQ0
    Conserved Domains (2) summary
    smart00717
    Location:135 → 183
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    pfam00249
    Location:135 → 181
    Myb_DNA-binding; Myb-like DNA-binding domain

  2. NM_111771.4 → NP_566350.1  myb domain protein 3r-3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566350.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4IZX3, Q8H1P9, Q94CC4, Q9M652, Q9SR26
    UniProtKB/TrEMBL
    A0A5S9XAQ0
    Conserved Domains (2) summary
    pfam13921
    Location:81 → 141
    Myb_DNA-bind_6; Myb-like DNA-binding domain
    cl28544
    Location:127 → 241
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

  3. NM_001337814.1 → NP_001327447.1  myb domain protein 3r-3 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VCZ4, A0A1I9LSC6
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8H1P9.1

Gene LinkOut

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