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SWIB/MDM2 domain superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820093, updated on 18-Sep-2024

Summary

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Official Full Name
SWIB/MDM2 domain superfamily protein
Primary source
TAIR:AT3G01890
Locus tag
AT3G01890
See related
Araport:AT3G01890
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F1C9.33; F1C9_33
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Genomic context

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Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (310007..312073)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene hypothetical protein (DUF946) Neighboring gene vacuolar sorting-associated protein (DUF946) Neighboring gene cytochrome P450, family 94, subfamily B, polypeptide 2 Neighboring gene sulfite oxidase Neighboring gene DHBP synthase RibB-like alpha/beta domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Sacharowski SP, et al. Plant Cell, 2015 Jul. PMID 26106148, Free PMC Article
  2. AtEAF1 is a potential platform protein for Arabidopsis NuA4 acetyltransferase complex. Bieluszewski T, et al. BMC Plant Biol, 2015 Mar 5. PMID 25849764, Free PMC Article
  3. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
  4. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. SWP73B acts as important modulator of major developmental pathways, while SWP73A functions in flowering time control.
    Title: SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_111055.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of flower development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
SWIB/MDM2 domain superfamily protein
NP_566154.2
  • SWIB/MDM2 domain superfamily protein; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 domain (InterPro:IPR003121); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain superfamily protein (TAIR:AT5G14170.1); Has 893 Blast hits to 865 proteins in 236 species: Archae - 0; Bacteria - 105; Metazoa - 289; Fungi - 279; Plants - 159; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    310007..312073
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111055.4 → NP_566154.2  SWIB/MDM2 domain superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566154.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VE35, A0A5S9X9A9, Q147F4, Q8GW71
    Conserved Domains (1) summary
    cd10568
    Location:253 → 320
    SWIB_like; SWIB domain found in the 60 kda subunit of the ATP-dependent SWI/SNF chromatin-remodeling complexes and similar proteins
Nucleotide Protein
Heading Accession and Version

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