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hypothetical protein (Protein of unknown function, DUF538) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820038, updated on 18-Sep-2024

Summary

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Official Full Name
hypothetical protein (Protein of unknown function, DUF538)
Primary source
TAIR:AT3G08890
Locus tag
AT3G08890
See related
Araport:AT3G08890
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
4
Sequence:
Chromosome: 3; NC_003074.8 (2706534..2708747)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene plectin-like protein Neighboring gene miscRNA Neighboring gene reversibly glycosylated polypeptide 3 Neighboring gene ncRNA Neighboring gene DNAJ heat shock family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_111723.4
NM_180213.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
hypothetical protein (Protein of unknown function, DUF538)
NP_566336.1
  • Protein of unknown function, DUF538; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT5G37070.1); Has 520 Blast hits to 520 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 520; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_850544.1
  • Protein of unknown function, DUF538; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT5G37070.1); Has 520 Blast hits to 520 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 520; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    2706534..2708747
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_180213.2 → NP_850544.1  hypothetical protein (Protein of unknown function, DUF538) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850544.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V896, A0A384LH42, Q9SR89
    Conserved Domains (1) summary
    pfam04398
    Location:55 → 158
    DUF538; Protein of unknown function, DUF538

  2. NM_111723.4 → NP_566336.1  hypothetical protein (Protein of unknown function, DUF538) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566336.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V896, A0A384LH42, Q9SR89
    Conserved Domains (1) summary
    pfam04398
    Location:55 → 158
    DUF538; Protein of unknown function, DUF538
Nucleotide Protein
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