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PYD4 PYRIMIDINE 4 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820034, updated on 18-Sep-2024

Summary

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Official Symbol
PYD4
Official Full Name
PYRIMIDINE 4
Primary source
TAIR:AT3G08860
Locus tag
AT3G08860
See related
Araport:AT3G08860
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
PYRIMIDINE 4
Summary
Encodes a protein that is predicted to have beta-alanine aminotransferase activity.
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Genomic context

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See PYD4 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
9
Sequence:
Chromosome: 3; NC_003074.8 (2696199..2699420, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene D-alanine-D-alanine ligase family Neighboring gene Regulatory-associated protein of TOR 1 Neighboring gene Concanavalin A-like lectin protein kinase family protein Neighboring gene plectin-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A functional analysis of the pyrimidine catabolic pathway in Arabidopsis. Zrenner R, et al. New Phytol, 2009. PMID 19413687, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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NM_001337783.1
NM_111720.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables alanine-glyoxylate transaminase activity IEA
Inferred from Electronic Annotation
more info
  
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
  
enables transaminase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cellular response to nitrogen levels IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
PYRIMIDINE 4
NP_187498.1
  • PYRIMIDINE 4 (PYD4); FUNCTIONS IN: pyridoxal phosphate binding, transaminase activity, catalytic activity, alanine-glyoxylate transaminase activity; INVOLVED IN: cellular response to nitrogen levels; LOCATED IN: mitochondrion; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase class-III (InterPro:IPR005814), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: alanine:glyoxylate aminotransferase 3 (TAIR:AT2G38400.1); Has 35951 Blast hits to 35930 proteins in 2736 species: Archae - 736; Bacteria - 23081; Metazoa - 661; Fungi - 840; Plants - 399; Viruses - 17; Other Eukaryotes - 10217 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    2696199..2699420 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111720.4 → NP_187498.1  PYRIMIDINE 4 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187498.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SR86
    UniProtKB/TrEMBL
    A0A178V7X5, A0A654F5A0, Q0WWF1
    Conserved Domains (1) summary
    COG0160
    Location:57 → 477
    GabT; 4-aminobutyrate aminotransferase or related aminotransferase [Amino acid transport and metabolism]

  2. NM_001337783.1 → NP_001326563.1  PYRIMIDINE 4 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V7X5, A0A1I9LPN6
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SR86.1

Gene LinkOut

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