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DNA glycosylase superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819984, updated on 18-Sep-2024

Summary

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Official Full Name
DNA glycosylase superfamily protein
Primary source
TAIR:AT3G07930
Locus tag
AT3G07930
See related
Araport:AT3G07930
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (2526513..2528639)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene O-fucosyltransferase family protein Neighboring gene reactive oxygen species modulator-like protein Neighboring gene Translation initiation factor IF2/IF5 Neighboring gene Calcium-dependent ARF-type GTPase activating protein family Neighboring gene rhomboid protein-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Alternative splicing of an exitron determines the subnuclear localization of the Arabidopsis DNA glycosylase MBD4L under heat stress. Cecchini NM, et al. Plant J, 2022 Apr. PMID 35061303
  2. Expression and function of AtMBD4L, the single gene encoding the nuclear DNA glycosylase MBD4L in Arabidopsis. Nota F, et al. Plant Sci, 2015 Jun. PMID 25900572
  3. The Arabidopsis DNA glycosylase MBD4L repairs the nuclear genome in vivo. Torres JR, et al. Plant J, 2023 Sep. PMID 37278489
  4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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NM_001337751.1
NM_111672.3
NM_202523.1
NM_202524.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA N-glycosylase activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in base-excision repair IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in cell death IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within cellular response to heat IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within response to heat IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in response to oxidative stress IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
DNA glycosylase superfamily protein
NP_566325.1
  • DNA glycosylase superfamily protein; Has 117 Blast hits to 117 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 67; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
NP_974252.1
  • DNA glycosylase superfamily protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_974253.1
  • DNA glycosylase superfamily protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: DNA repair, base-excision repair; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), HhH-GPD domain (InterPro:IPR003265); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    2526513..2528639
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111672.3 → NP_566325.1  DNA glycosylase superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566325.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VF15

  2. NM_001337751.1 → NP_001327391.1  DNA glycosylase superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0IGK1

  3. NM_202524.2 → NP_974253.1  DNA glycosylase superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974253.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4JFQ3, Q0IGK1, Q3EBA6, Q84WT3, Q8LB76, Q9SFC1
    UniProtKB/TrEMBL
    A0A178VGP7, A0A5S9XA47
    Conserved Domains (1) summary
    cl23768
    Location:319 → 389
    ENDO3c; endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases

  4. NM_202523.1 → NP_974252.1  DNA glycosylase superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974252.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VF15
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0IGK1.1

Gene LinkOut

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