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Pectin lyase-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819973, updated on 18-Sep-2024

Summary

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Official Full Name
Pectin lyase-like superfamily protein
Primary source
TAIR:AT3G07820
Locus tag
AT3G07820
See related
Araport:AT3G07820
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
4
Sequence:
Chromosome: 3; NC_003074.8 (2496331..2498095, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Thymidine kinase Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene Pectin lyase-like superfamily protein Neighboring gene Pectin lyase-like superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_111661.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Pectin lyase-like superfamily protein
NP_187439.1
  • Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G07830.1); Has 3636 Blast hits to 3621 proteins in 442 species: Archae - 6; Bacteria - 812; Metazoa - 14; Fungi - 1257; Plants - 1440; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    2496331..2498095 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111661.3 → NP_187439.1  Pectin lyase-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187439.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VIL1, A0A384LF05, A0A5S9XAF1, A0A654F6J3, O65905, Q9SFD2
    Conserved Domains (1) summary
    cl19188
    Location:33 → 386
    PL-6; Polysaccharide Lyase Family 6
Nucleotide Protein
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