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AIR12 auxin-induced in root cultures-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819927, updated on 18-Sep-2024

Summary

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Official Symbol
AIR12
Official Full Name
auxin-induced in root cultures-like protein
Primary source
TAIR:AT3G07390
Locus tag
AT3G07390
See related
Araport:AT3G07390
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
Auxin-Induced in Root cultures 12
Summary
isolated from differential screening of a cDNA library from auxin-treated root culture. sequence does not show homology to any known proteins and is predicted to be extracellular.
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Genomic context

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See AIR12 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_003074.8 (2365301..2366496)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene glycosyltransferase family protein (DUF23) Neighboring gene miscRNA Neighboring gene lipase class 3 family protein Neighboring gene RAB GTPase homolog A5B Neighboring gene asparaginyl-tRNA synthetase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. AIR12, a b-type cytochrome of the plasma membrane of Arabidopsis thaliana is a negative regulator of resistance against Botrytis cinerea. Costa A, et al. Plant Sci, 2015 Apr. PMID 25711811
  2. Isolation and characterization of cDNA clones corresponding with mRNAs that accumulate during auxin-induced lateral root formation. Neuteboom LW, et al. Plant Mol Biol, 1999 Jan. PMID 10080694
  3. Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry. Nühse TS, et al. Mol Cell Proteomics, 2003 Nov. PMID 14506206
  4. Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis. Borner GH, et al. Plant Physiol, 2003 Jun. PMID 12805588, Free PMC Article
  5. Prediction of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A genomic analysis. Borner GH, et al. Plant Physiol, 2002 Jun. PMID 12068095, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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NM_001337711.1
NM_111618.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables extracellular matrix structural constituent TAS
Traceable Author Statement
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within extracellular matrix organization TAS
Traceable Author Statement
more info
 PubMed 
acts_upstream_of_or_within lateral root morphogenesis IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within response to auxin IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol HDA PubMed 
located_in extracellular region TAS
Traceable Author Statement
more info
 PubMed 
located_in membrane TAS
Traceable Author Statement
more info
 PubMed 
located_in plasma membrane HDA PubMed 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
auxin-induced in root cultures-like protein
NP_566306.3
  • Auxin-Induced in Root cultures 12 (AIR12); FUNCTIONS IN: extracellular matrix structural constituent; INVOLVED IN: response to auxin stimulus, lateral root morphogenesis, extracellular matrix organization; LOCATED IN: extracellular region, anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF568, DOMON-like (InterPro:IPR007613), DOMON related (InterPro:IPR005018); BEST Arabidopsis thaliana protein match is: Auxin-responsive family protein (TAIR:AT3G25290.2); Has 254 Blast hits to 254 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 248; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    2365301..2366496
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111618.3 → NP_566306.3  auxin-induced in root cultures-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566306.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4JEF2, O82442, Q94BT2, Q9SRS7
    UniProtKB/TrEMBL
    A0A178VEI7
    Conserved Domains (2) summary
    PHA03185
    Location:182 → 246
    PHA03185; UL14 tegument protein; Provisional
    cd09629
    Location:61 → 213
    DOMON_CIL1_like; DOMON-like domain of Brassica carinata CIL1 and similar proteins

  2. NM_001337711.1 → NP_001327216.1  auxin-induced in root cultures-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LRM3
Nucleotide Protein
Heading Accession and Version

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