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Sterile alpha motif (SAM) domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819904, updated on 18-Sep-2024

Summary

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Official Full Name
Sterile alpha motif (SAM) domain-containing protein
Primary source
TAIR:AT3G07170
Locus tag
AT3G07170
See related
Araport:AT3G07170
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
7
Sequence:
Chromosome: 3; NC_003074.8 (2280194..2282339)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene GPI transamidase component Gpi16 subunit family protein Neighboring gene amino acid-ligase Neighboring gene glucan synthase-like 10 Neighboring gene ncRNA Neighboring gene GPI transamidase component PIG-S-like protein Neighboring gene tRNA-Lys Neighboring gene B-cell receptor-associated protein 31-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Plant-specific ribosome biogenesis factors in Arabidopsis thaliana with essential function in rRNA processing. Palm D, et al. Nucleic Acids Res, 2019 Feb 28. PMID 30576513, Free PMC Article
  2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001337695.1
NM_111597.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables glycosyltransferase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within rRNA processing IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in nucleolus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Sterile alpha motif (SAM) domain-containing protein
NP_566300.1
  • Sterile alpha motif (SAM) domain-containing protein; CONTAINS InterPro DOMAIN/s: Sterile alpha motif (InterPro:IPR001660), Sterile alpha motif homology (InterPro:IPR010993), Sterile alpha motif, type 1 (InterPro:IPR021129); BEST Arabidopsis thaliana protein match is: Sterile alpha motif (SAM) domain-containing protein (TAIR:AT5G48680.1); Has 516 Blast hits to 515 proteins in 77 species: Archae - 0; Bacteria - 10; Metazoa - 341; Fungi - 2; Plants - 148; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    2280194..2282339
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111597.3 → NP_566300.1  Sterile alpha motif (SAM) domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566300.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VJA7, A0A384KNS6, Q9SFU7
    Conserved Domains (1) summary
    cd09487
    Location:147 → 199
    SAM_superfamily; SAM (Sterile alpha motif )

  2. NM_001337695.1 → NP_001327914.1  Sterile alpha motif (SAM) domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LTS5
Nucleotide Protein
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