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Outer arm dynein light chain 1 protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819843, updated on 18-Sep-2024

Summary

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Official Full Name
Outer arm dynein light chain 1 protein
Primary source
TAIR:AT3G17920
Locus tag
AT3G17920
See related
Araport:AT3G17920
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
12
Sequence:
Chromosome: 3; NC_003074.8 (6136986..6142157)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene heat-inducible transcription repressor Neighboring gene Surfeit locus 1 cytochrome c oxidase biogenesis protein Neighboring gene Galactose mutarotase-like superfamily protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_001338314.1
NM_001338315.1
NM_112673.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Outer arm dynein light chain 1 protein
NP_001319579.1
  • Outer arm dynein light chain 1 protein; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Outer arm dynein light chain 1 protein (TAIR:AT1G48540.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_188419.2
  • Outer arm dynein light chain 1 protein; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Outer arm dynein light chain 1 protein (TAIR:AT1G48540.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    6136986..6142157
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112673.3 → NP_188419.2  Outer arm dynein light chain 1 protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188419.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654F897, F4J6G5
    Conserved Domains (4) summary
    cd00116
    Location:189 → 297
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00031
    Location:193 → 214
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:51 → 78
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:237 → 295
    LRR_8; Leucine rich repeat

  2. NM_001338314.1 → NP_001319579.1  Outer arm dynein light chain 1 protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VHP0, B3H486

  3. NM_001338315.1 → NP_001326531.1  Outer arm dynein light chain 1 protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VHP0, A0A1I9LPK3
Nucleotide Protein
Heading Accession and Version

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