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agenet domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819830, updated on 18-Sep-2024

Summary

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Official Full Name
agenet domain-containing protein
Primary source
TAIR:AT3G06520
Locus tag
AT3G06520
See related
Araport:AT3G06520
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F5E6.15; F5E6_15
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Genomic context

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Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (2019849..2022102)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Plant neutral invertase family protein Neighboring gene Glycosyl hydrolase superfamily protein Neighboring gene ARM repeat superfamily protein Neighboring gene Rab escort protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_001337661.1
NM_111528.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
agenet domain-containing protein
NP_001319487.1
  • agenet domain-containing protein; FUNCTIONS IN: RNA binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein (TAIR:AT1G09320.1); Has 523 Blast hits to 271 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 518; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    2019849..2022102
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001337661.1 → NP_001319487.1  agenet domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VAD1, Q9C8Z3

  2. NM_111528.2 → NP_187304.1  agenet domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187304.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VAD1, Q9C8Z3
    Conserved Domains (2) summary
    smart00743
    Location:77 → 136
    Agenet; Tudor-like domain present in plant sequences
    pfam05641
    Location:172 → 235
    Agenet; Agenet domain
Nucleotide Protein
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