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AGP27 arabinogalactan protein 27 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819810, updated on 18-Sep-2024

Summary

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Official Symbol
AGP27
Official Full Name
arabinogalactan protein 27
Primary source
TAIR:AT3G06360
Locus tag
AT3G06360
See related
Araport:AT3G06360
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
arabinogalactan protein 27; ARABINOGALACTAN PROTEIN 27; ATAGP27; F24P17.17; F24P17_17
Summary
Encodes an arabinogalactan-protein (AGP27).
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Genomic context

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See AGP27 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_003074.8 (1928868..1929684)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene DNAJ heat shock N-terminal domain-containing protein Neighboring gene dehydroquinate dehydratase, putative / shikimate dehydrogenase Neighboring gene sodium hydrogen exchanger 4 Neighboring gene tubby-like protein 9

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A membrane protein/signaling protein interaction network for Arabidopsis version AMPv2. Lalonde S, et al. Front Physiol, 2010. PMID 21423366, Free PMC Article
  2. Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis. Borner GH, et al. Plant Physiol, 2003 Jun. PMID 12805588, Free PMC Article
  3. Prediction of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A genomic analysis. Borner GH, et al. Plant Physiol, 2002 Jun. PMID 12068095, Free PMC Article
  4. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_111511.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in membrane TAS
Traceable Author Statement
more info
 PubMed 
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
arabinogalactan protein 27
NP_566282.1
  • arabinogalactan protein 27 (AGP27); Has 143 Blast hits to 114 proteins in 33 species: Archae - 0; Bacteria - 2; Metazoa - 17; Fungi - 12; Plants - 53; Viruses - 8; Other Eukaryotes - 51 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    1928868..1929684
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111511.2 → NP_566282.1  arabinogalactan protein 27 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566282.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SQT9
    UniProtKB/TrEMBL
    A0A178VHI1, A0A654F9X9, A0MEU7
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SQT9.1

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