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RING/U-box superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819807, updated on 18-Sep-2024

Summary

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Official Full Name
RING/U-box superfamily protein
Primary source
TAIR:AT3G06330
Locus tag
AT3G06330
See related
Araport:AT3G06330
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F24P17.21; F24P17_21
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Genomic context

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Location:
chromosome: 3
Exon count:
9
Sequence:
Chromosome: 3; NC_003074.8 (1917131..1919984)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Cox19-like CHCH family protein Neighboring gene Ribosomal protein L33 family protein Neighboring gene tRNA-Pro Neighboring gene DNAJ heat shock N-terminal domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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NM_001084645.2
NM_001337647.1
NM_001337648.1
NM_111508.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ubiquitin-protein transferase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within protein ubiquitination IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RING/U-box superfamily protein
NP_001078114.1
  • RING/U-box superfamily protein; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G18760.1); Has 1679 Blast hits to 1519 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 662; Fungi - 124; Plants - 642; Viruses - 4; Other Eukaryotes - 247 (source: NCBI BLink).
NP_001319485.1
  • RING/U-box superfamily protein; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G18760.1); Has 1463 Blast hits to 1461 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 638; Fungi - 108; Plants - 632; Viruses - 4; Other Eukaryotes - 81 (source: NCBI BLink).
NP_566281.1
  • RING/U-box superfamily protein; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G18760.1); Has 1679 Blast hits to 1517 proteins in 175 species: Archae - 0; Bacteria - 0; Metazoa - 662; Fungi - 120; Plants - 648; Viruses - 4; Other Eukaryotes - 245 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    1917131..1919984
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111508.3 → NP_566281.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566281.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VHI6, Q9SQT6
    Conserved Domains (2) summary
    smart00744
    Location:217 → 265
    RINGv; The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins
    pfam07698
    Location:306 → 418
    7TM-7TMR_HD; 7TM receptor with intracellular HD hydrolase

  2. NM_001084645.2 → NP_001078114.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078114.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VHI6, B3H497
    Conserved Domains (1) summary
    smart00744
    Location:217 → 265
    RINGv; The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

  3. NM_001337648.1 → NP_001327571.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LSQ6

  4. NM_001337647.1 → NP_001319485.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q2V3X9
    Conserved Domains (1) summary
    smart00744
    Location:48 → 96
    RINGv; The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins
Nucleotide Protein
Heading Accession and Version

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