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PAS_FragB_0048 Protein ROT1 [ Komagataella phaffii GS115 ]

Gene ID: 8197489, updated on 23-Nov-2023

Summary

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Gene symbol
PAS_FragB_0048
Gene description
Protein ROT1
Locus tag
PAS_FragB_0048
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Komagataella phaffii GS115 (strain: GS115)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Phaffomycetaceae; Komagataella
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Genomic context

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See PAS_FragB_0048 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_012963.1 (2745117..2745878)

Chromosome 1 - NC_012963.1Genomic Context describing neighboring genes Neighboring gene Hypothetical protein Neighboring gene G1/S-specific cyclin Neighboring gene Vacuolar protein sorting-associated protein 27 Neighboring gene putative transporter Neighboring gene Hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012963.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the recombinant protein production host Pichia pastoris. De Schutter K, et al. Nat Biotechnol, 2009 Jun. PMID 19465926
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in 'de novo' protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in budding cell apical bud growth IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Protein ROT1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012963.1 Reference assembly

    Range
    2745117..2745878
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002490815.1 → XP_002490860.1  Protein ROT1 [Komagataella phaffii GS115]

    See identical proteins and their annotated locations for XP_002490860.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    C4QZA6, F2QQG4
    Conserved Domains (1) summary
    pfam10681
    Location:35 → 250
    Rot1; Chaperone for protein-folding within the ER, fungal
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials