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TRM6 serine-rich adhesin for platelets-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819744, updated on 18-Sep-2024

Summary

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Official Symbol
TRM6
Official Full Name
serine-rich adhesin for platelets-like protein
Primary source
TAIR:AT3G05750
Locus tag
AT3G05750
See related
Araport:AT3G05750
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F10A16.3; F10A16_3; TON1 Recruiting Motif 6
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Genomic context

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See TRM6 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Sequence:
Chromosome: 3; NC_003074.8 (1703850..1707730)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene RECQ helicase l1 Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily protein Neighboring gene uncharacterized protein Neighboring gene tRNA-Pro Neighboring gene C2H2 and C2HC zinc fingers superfamily protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The preprophase band of microtubules controls the robustness of division orientation in plants. Schaefer E, et al. Science, 2017 Apr 14. PMID 28408602
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_001035570.1
NM_001337606.1
NM_001337607.1
NM_111449.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within establishment of mitotic spindle orientation IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within preprophase band assembly IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in preprophase band IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
serine-rich adhesin for platelets-like protein
NP_001030647.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26910.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_187226.2
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26910.1); Has 2317 Blast hits to 1467 proteins in 247 species: Archae - 4; Bacteria - 750; Metazoa - 557; Fungi - 182; Plants - 180; Viruses - 0; Other Eukaryotes - 644 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    1703850..1707730
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111449.4 → NP_187226.2  serine-rich adhesin for platelets-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187226.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2EIP8, F4J8I0, Q9M9M1
    Conserved Domains (2) summary
    pfam14309
    Location:646 → 792
    DUF4378; Domain of unknown function (DUF4378)
    pfam14383
    Location:90 → 110
    VARLMGL; DUF761-associated sequence motif

  2. NM_001337606.1 → NP_001325711.1  serine-rich adhesin for platelets-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4J8I1, Q9M9M1

  3. NM_001337607.1 → NP_001325712.1  serine-rich adhesin for platelets-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LM29, Q9M9M1

  4. NM_001035570.1 → NP_001030647.1  serine-rich adhesin for platelets-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001030647.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4J8I1, Q9M9M1
    Conserved Domains (1) summary
    pfam14309
    Location:544 → 689
    DUF4378; Domain of unknown function (DUF4378)
Nucleotide Protein
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