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PNC1 peroxisomal adenine nucleotide carrier 1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819693, updated on 18-Sep-2024

Summary

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Official Symbol
PNC1
Official Full Name
peroxisomal adenine nucleotide carrier 1
Primary source
TAIR:AT3G05290
Locus tag
AT3G05290
See related
Araport:AT3G05290
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtPNC1; peroxisomal adenine nucleotide carrier 1; T12H1.26; T12H1_26
Summary
encodes a peroxisomal adenine nucleotide transporter, involved in fatty acid beta-oxidation during early stage of postgerminative growth.
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Genomic context

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See PNC1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Sequence:
Chromosome: 3; NC_003074.8 (1505831..1507835, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene filament-like protein (DUF869) Neighboring gene Integral membrane Yip1 family protein Neighboring gene Cytidine/deoxycytidylate deaminase family protein Neighboring gene MIRO-related GTP-ase 3 Neighboring gene O-fucosyltransferase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Peroxisomal ATP import is essential for seedling development in Arabidopsis thaliana. Linka N, et al. Plant Cell, 2008 Dec. PMID 19073763, Free PMC Article
  2. Proteomic identification and characterization of a novel peroxisomal adenine nucleotide transporter supplying ATP for fatty acid beta-oxidation in soybean and Arabidopsis. Arai Y, et al. Plant Cell, 2008 Dec. PMID 19073762, Free PMC Article
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_111402.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ADP transmembrane transporter activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables ADP transmembrane transporter activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables ATP transmembrane transporter activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables ATP transmembrane transporter activity IGI
Inferred from Genetic Interaction
more info
 PubMed 
enables ATP transmembrane transporter activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within ADP transport IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within ATP transport IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within fatty acid beta-oxidation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within indolebutyric acid metabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within seedling development IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in seedling development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in peroxisome IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
peroxisomal adenine nucleotide carrier 1
NP_566251.1
  • peroxisomal adenine nucleotide carrier 1 (PNC1); CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: peroxisomal adenine nucleotide carrier 2 (TAIR:AT5G27520.1); Has 7303 Blast hits to 6606 proteins in 315 species: Archae - 0; Bacteria - 0; Metazoa - 2896; Fungi - 2326; Plants - 1372; Viruses - 0; Other Eukaryotes - 709 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    1505831..1507835 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111402.5 → NP_566251.1  peroxisomal adenine nucleotide carrier 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566251.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8L9D8, Q9MA90
    UniProtKB/TrEMBL
    A0A178V9A1, A0A5S9X987, A0A654F5W8
    Conserved Domains (1) summary
    pfam00153
    Location:202 → 295
    Mito_carr; Mitochondrial carrier protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9MA90.1

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