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Heavy metal transport/detoxification superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819686, updated on 18-Sep-2024

Summary

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Official Full Name
Heavy metal transport/detoxification superfamily protein
Primary source
TAIR:AT3G05220
Locus tag
AT3G05220
See related
Araport:AT3G05220
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T12H1.19; T12H1_19
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Genomic context

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Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (1488329..1491772)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene RING/U-box superfamily protein Neighboring gene nucleotide repair protein Neighboring gene Signal peptidase subunit Neighboring gene mitochondrial editing factor 19 Neighboring gene RING/U-box superfamily protein Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_111395.4
NM_202497.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
Heavy metal transport/detoxification superfamily protein
NP_187173.2
  • Heavy metal transport/detoxification superfamily protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT5G19090.3); Has 104094 Blast hits to 37949 proteins in 1893 species: Archae - 136; Bacteria - 23727; Metazoa - 41586; Fungi - 5547; Plants - 9947; Viruses - 1642; Other Eukaryotes - 21509 (source: NCBI BLink).
NP_974226.1
  • Heavy metal transport/detoxification superfamily protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    1488329..1491772
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111395.4 → NP_187173.2  Heavy metal transport/detoxification superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187173.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WV37, Q9MA97
    UniProtKB/TrEMBL
    A0A5S9X9J4
    Conserved Domains (1) summary
    cd00371
    Location:13 → 72
    HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...

  2. NM_202497.2 → NP_974226.1  Heavy metal transport/detoxification superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974226.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9X9J4, Q3E7M7
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0WV37.1

Gene LinkOut

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