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trichohyalin, putative (DUF3444) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819656, updated on 18-Sep-2024

Summary

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Official Full Name
trichohyalin, putative (DUF3444)
Primary source
TAIR:AT3G04960
Locus tag
AT3G04960
See related
Araport:AT3G04960
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T9J14.9; T9J14_9
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Genomic context

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Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (1373688..1375989)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene low-molecular-weight cysteine-rich 18 Neighboring gene SEC-C motif protein Neighboring gene DHHC-type zinc finger family protein Neighboring gene DNAJ heat shock N-terminal domain-containing protein Neighboring gene ncRNA Neighboring gene intracellular protein transporter

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_001084639.1
NM_001084640.2
NM_001202881.1
NM_111368.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus ISM
Inferred from Sequence Model
more info
  
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
trichohyalin, putative (DUF3444)
NP_001078108.1
  • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF3444) (TAIR:AT4G27980.1); Has 20945 Blast hits to 14757 proteins in 1130 species: Archae - 326; Bacteria - 2117; Metazoa - 9449; Fungi - 1430; Plants - 1214; Viruses - 36; Other Eukaryotes - 6373 (source: NCBI BLink).
NP_001078109.1
  • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF3444) (TAIR:AT4G27980.1); Has 33111 Blast hits to 21453 proteins in 1461 species: Archae - 544; Bacteria - 3468; Metazoa - 15851; Fungi - 2267; Plants - 1766; Viruses - 45; Other Eukaryotes - 9170 (source: NCBI BLink).
NP_001189810.1
  • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF3444) (TAIR:AT4G27980.1).
NP_187147.2
  • CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF3444) (TAIR:AT4G27980.1); Has 31210 Blast hits to 20329 proteins in 1398 species: Archae - 511; Bacteria - 3238; Metazoa - 14770; Fungi - 2177; Plants - 1702; Viruses - 48; Other Eukaryotes - 8764 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    1373688..1375989
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001084640.2 → NP_001078109.1  trichohyalin, putative (DUF3444) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078109.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VCU8, A0A384LDH9, F4J631, Q9CAW0
    Conserved Domains (2) summary
    TIGR02168
    Location:31 → 334
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam11926
    Location:371 → 567
    DUF3444; Domain of unknown function (DUF3444)

  2. NM_001202881.1 → NP_001189810.1  trichohyalin, putative (DUF3444) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189810.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4J632, Q9CAW0
    Conserved Domains (1) summary
    pfam11926
    Location:321 → 515
    DUF3444; Domain of unknown function (DUF3444)

  3. NM_111368.3 → NP_187147.2  trichohyalin, putative (DUF3444) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187147.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654F488, A8MR58
    Conserved Domains (1) summary
    pfam11926
    Location:324 → 518
    DUF3444; Domain of unknown function (DUF3444)

  4. NM_001084639.1 → NP_001078108.1  trichohyalin, putative (DUF3444) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078108.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654F488, A8MQS7
    Conserved Domains (1) summary
    pfam11926
    Location:272 → 466
    DUF3444; Domain of unknown function (DUF3444)
Nucleotide Protein
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