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DRT102 DNA-damage-repair/toleration protein (DRT102) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819648, updated on 18-Sep-2024

Summary

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Official Symbol
DRT102
Official Full Name
DNA-damage-repair/toleration protein (DRT102)
Primary source
TAIR:AT3G04880
Locus tag
AT3G04880
See related
Araport:AT3G04880
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
DNA-DAMAGE-REPAIR/TOLERATION 2; T9J14.17; T9J14_17
Summary
encodes a novel protein involved in DNA repair from UV damage. Isolated by functional complementation of E. coli UV-sensitive mutants (UVR genes).
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Genomic context

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See DRT102 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_003074.8 (1346273..1347377, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene miscRNA Neighboring gene hypothetical protein (DUF868) Neighboring gene zeta-carotene desaturase Neighboring gene ncRNA Neighboring gene adenine phosphoribosyltransferase-like protein, putative (DUF2358) Neighboring gene Heavy metal transport/detoxification superfamily protein Neighboring gene Defensin-like (DEFL) family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Selection of Arabidopsis cDNAs that partially correct phenotypes of Escherichia coli DNA-damage-sensitive mutants and analysis of two plant cDNAs that appear to express UV-specific dark repair activities. Pang Q, et al. Plant Mol Biol, 1993 Jun. PMID 8329681
  2. Analysis of the Arabidopsis nuclear proteome and its response to cold stress. Bae MS, et al. Plant J, 2003 Dec. PMID 14617066
  3. High-throughput protein localization in Arabidopsis using Agrobacterium-mediated transient expression of GFP-ORF fusions. Koroleva OA, et al. Plant J, 2005 Jan. PMID 15610358
  4. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
  5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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NM_111360.2

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within photoreactive repair IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within response to UV IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm HDA PubMed 
located_in cytosol HDA PubMed 
located_in nucleus HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
DNA-damage-repair/toleration protein (DRT102)
NP_566241.1
  • DNA-DAMAGE-REPAIR/TOLERATION 2 (DRT102); INVOLVED IN: response to UV, photoreactive repair, response to cold; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribose/galactose isomerase (InterPro:IPR003500), DNA-damage-repair/toleration protein, DRT102 (InterPro:IPR012100), Cupin 2, conserved barrel (InterPro:IPR013096), Cupin, RmlC-type (InterPro:IPR011051), RmlC-like jelly roll fold (InterPro:IPR014710); Has 4975 Blast hits to 4975 proteins in 1551 species: Archae - 4; Bacteria - 3564; Metazoa - 0; Fungi - 71; Plants - 32; Viruses - 0; Other Eukaryotes - 1304 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    1346273..1347377 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111360.2 → NP_566241.1  DNA-damage-repair/toleration protein (DRT102) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566241.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q05212, Q941E8
    UniProtKB/TrEMBL
    A0A178VBH3, A0A5S9X9F4, A0A654F5J7, A0A7G2EMH5
    Conserved Domains (2) summary
    pfam02502
    Location:14 → 138
    LacAB_rpiB; Ribose/Galactose Isomerase
    cl21464
    Location:220 → 284
    cupin_like; Conserved domain found in cupin and related proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q05212.2

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