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Pseudouridine synthase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819642, updated on 18-Sep-2024

Summary

Official Full Name
Pseudouridine synthase family protein
Primary source
TAIR:AT3G04820
Locus tag
AT3G04820
See related
Araport:AT3G04820
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T9J14.23; T9J14_23
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Genomic context

Location:
chromosome: 3
Exon count:
20
Sequence:
Chromosome: 3; NC_003074.8 (1321228..1326005, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene translocase inner membrane subunit 23-3 Neighboring gene NIMA-related kinase 2 Neighboring gene ncRNA Neighboring gene Protein prenylyltransferase superfamily protein Neighboring gene Ribosomal protein S3Ae

General gene information

NM_111354.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 
enables pseudouridine synthase activity TAS
Traceable Author Statement
more info
PubMed 
Component Evidence Code Pubs
located_in chloroplast IDA
Inferred from Direct Assay
more info
PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
 

General protein information

Preferred Names
Pseudouridine synthase family protein
NP_187133.3
  • Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase, TruD (InterPro:IPR001656), Pseudouridine synthase TruD, eukaryotic (InterPro:IPR017091), Pseudouridine synthase, TruD, insertion domain (InterPro:IPR011760); Has 2276 Blast hits to 2198 proteins in 933 species: Archae - 260; Bacteria - 1262; Metazoa - 203; Fungi - 153; Plants - 61; Viruses - 0; Other Eukaryotes - 337 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    1321228..1326005 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111354.5NP_187133.3  Pseudouridine synthase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187133.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VCY9, A0A384KPV3, A0A5S9X936, Q5XVC2
    Conserved Domains (1) summary
    cd02576
    Location:56702
    PseudoU_synth_ScPUS7; Pseudouridine synthase, TruD family