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carboxylate clamp-TPR protein (DUF1685) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819628, updated on 18-Sep-2024

Summary

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Official Full Name
carboxylate clamp-TPR protein (DUF1685)
Primary source
TAIR:AT3G04700
Locus tag
AT3G04700
See related
Araport:AT3G04700
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F7O18.17; F7O18_17
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Genomic context

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Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (1276668..1277824)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene WRKY DNA-binding protein 39 Neighboring gene CLP-similar protein 3 Neighboring gene Malectin/receptor-like protein kinase family protein Neighboring gene ankyrin repeat family protein Neighboring gene miscRNA Neighboring gene miscRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_111342.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
carboxylate clamp-TPR protein (DUF1685)
NP_187121.1
  • CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT3G04710.3); Has 200 Blast hits to 200 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    1276668..1277824
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111342.2 → NP_187121.1  carboxylate clamp-TPR protein (DUF1685) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187121.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VD21, A0A384LBY6, Q9SR04
    Conserved Domains (1) summary
    pfam07939
    Location:82 → 125
    DUF1685; Protein of unknown function (DUF1685)
Nucleotide Protein
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