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WRKY39 WRKY DNA-binding protein 39 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819625, updated on 18-Sep-2024

Summary

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Official Symbol
WRKY39
Official Full Name
WRKY DNA-binding protein 39
Primary source
TAIR:AT3G04670
Locus tag
AT3G04670
See related
Araport:AT3G04670
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATWRKY39; F7O18.30; F7O18_30; WRKY DNA-binding protein 39; WRKY DNA-BINDING PROTEIN 39
Summary
member of WRKY Transcription Factor; Group II-d
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Genomic context

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See WRKY39 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (1266056..1268378, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene FAD/NAD(P)-binding oxidoreductase family protein Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene CLP-similar protein 3 Neighboring gene Malectin/receptor-like protein kinase family protein Neighboring gene carboxylate clamp-TPR protein (DUF1685) Neighboring gene ankyrin repeat family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. WRKY group IId transcription factors interact with calmodulin. Park CY, et al. FEBS Lett, 2005 Feb 28. PMID 15733871
  2. The WRKY superfamily of plant transcription factors. Eulgem T, et al. Trends Plant Sci, 2000 May. PMID 10785665
  3. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article
  4. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
  5. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001035557.2
NM_111339.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables calmodulin binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IC
Inferred by Curator
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
WRKY DNA-binding protein 39
NP_001030634.1
  • WRKY DNA-binding protein 39 (WRKY39); FUNCTIONS IN: calmodulin binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657), Transcription factor, WRKY, Zn-cluster (InterPro:IPR018872); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 74 (TAIR:AT5G28650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_566236.1
  • WRKY DNA-binding protein 39 (WRKY39); FUNCTIONS IN: calmodulin binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657), Transcription factor, WRKY, Zn-cluster (InterPro:IPR018872); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 74 (TAIR:AT5G28650.1); Has 3371 Blast hits to 2926 proteins in 187 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3355; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    1266056..1268378 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111339.3 → NP_566236.1  WRKY DNA-binding protein 39 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566236.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SR07
    UniProtKB/TrEMBL
    A0A178V8X7, A0A5S9X9F9, A0A654F437
    Conserved Domains (2) summary
    smart00774
    Location:261 → 319
    WRKY; DNA binding domain
    pfam10533
    Location:223 → 259
    Plant_zn_clust; Plant zinc cluster domain

  2. NM_001035557.2 → NP_001030634.1  WRKY DNA-binding protein 39 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001030634.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V8X7, B9DG02
    Conserved Domains (2) summary
    pfam03106
    Location:263 → 286
    WRKY; WRKY DNA -binding domain
    pfam10533
    Location:223 → 259
    Plant_zn_clust; Plant zinc cluster domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SR07.1

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