U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Calcium-dependent lipid-binding (CaLB domain) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819591, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
Calcium-dependent lipid-binding (CaLB domain) family protein
Primary source
TAIR:AT3G04360
Locus tag
AT3G04360
See related
Araport:AT3G04360
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T6K12.2; T6K12_2
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_003074.8 (1156908..1158470, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene FtsH extracellular protease family Neighboring gene vacuolar sorting-associated protein (DUF946) Neighboring gene plasmodesmata-located protein 4 Neighboring gene SET-domain containing protein lysine methyltransferase family protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help
NM_111307.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in defense response IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
Calcium-dependent lipid-binding (CaLB domain) family protein
NP_566225.4
  • Calcium-dependent lipid-binding (CaLB domain) family protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT1G04540.1); Has 385 Blast hits to 364 proteins in 38 species: Archae - 0; Bacteria - 22; Metazoa - 10; Fungi - 6; Plants - 333; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    1156908..1158470 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111307.5 → NP_566225.4  Calcium-dependent lipid-binding (CaLB domain) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566225.4

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VE00, F4J3N4
    Conserved Domains (1) summary
    cd04051
    Location:11 → 143
    C2_SRC2_like; C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools