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Rubber elongation factor protein (REF) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819390, updated on 18-Sep-2024

Summary

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Official Full Name
Rubber elongation factor protein (REF)
Primary source
TAIR:AT2G47780
Locus tag
AT2G47780
See related
Araport:AT2G47780
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F17A22.17
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Genomic context

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Location:
chromosome: 2
Exon count:
2
Sequence:
Chromosome: 2; NC_003071.7 (19570040..19571034)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene asparagine-linked glycosylation 3 Neighboring gene TSPO(outer membrane tryptophan-rich sensory protein)-like protein Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene multidrug resistance-associated protein 4 Neighboring gene nuclear factor Y, subunit B5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis Small Rubber Particle Protein Homolog SRPs Play Dual Roles as Positive Factors for Tissue Growth and Development and in Drought Stress Responses. Kim EY, et al. Plant Physiol, 2016 Apr. PMID 26903535, Free PMC Article
  2. Lipid Droplet-Associated Proteins (LDAPs) Are Required for the Dynamic Regulation of Neutral Lipid Compartmentation in Plant Cells. Gidda SK, et al. Plant Physiol, 2016 Apr. PMID 26896396, Free PMC Article
  3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. LDAPs are required for the maintenance and regulation of lipid droplets in plant cells and perform nonredundant functions in various physiological contexts, including stress response and postgerminative growth. [LDP2]
    Title: Lipid Droplet-Associated Proteins (LDAPs) Are Required for the Dynamic Regulation of Neutral Lipid Compartmentation in Plant Cells.
  2. Arabidopsis SRPs (SRP1, SRP2, and SRP3) play dual roles as positive factors in postgermination growth and the drought stress tolerance response.
    Title: Arabidopsis Small Rubber Particle Protein Homolog SRPs Play Dual Roles as Positive Factors for Tissue Growth and Development and in Drought Stress Responses.
Submit: New GeneRIF Correction

General gene information

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Homology

NM_130345.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within developmental vegetative growth IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within lipid droplet organization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within positive regulation of growth IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within positive regulation of response to water deprivation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in lipid droplet IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Rubber elongation factor protein (REF)
NP_182299.1
  • Rubber elongation factor protein (REF); CONTAINS InterPro DOMAIN/s: Rubber elongation factor (InterPro:IPR008802); BEST Arabidopsis thaliana protein match is: Rubber elongation factor protein (REF) (TAIR:AT3G05500.1); Has 126 Blast hits to 126 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 126; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    19570040..19571034
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_130345.5 → NP_182299.1  Rubber elongation factor protein (REF) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_182299.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O82246
    UniProtKB/TrEMBL
    A0A178VWY2, A0A5S9X7W5, A0A7G2EK16
    Conserved Domains (1) summary
    pfam05755
    Location:35 → 229
    REF; Rubber elongation factor protein (REF)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O82246.1

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