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zinc finger (CCCH type) helicase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819381, updated on 18-Sep-2024

Summary

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Official Full Name
zinc finger (CCCH type) helicase family protein
Primary source
TAIR:AT2G47680
Locus tag
AT2G47680
See related
Araport:AT2G47680
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F17A22.7
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Genomic context

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Location:
chromosome: 2
Exon count:
14
Sequence:
Chromosome: 2; NC_003071.7 (19545656..19551171, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Small nuclear ribonucleoprotein family protein Neighboring gene UDP-xylose synthase 4 Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily protein Neighboring gene NADH-ubiquinone oxidoreductase-like protein Neighboring gene RING/U-box superfamily protein Neighboring gene Adenine nucleotide alpha hydrolases-like superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
  2. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
  3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_130336.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
  
enables mRNA binding HDA PubMed 
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
zinc finger (CCCH type) helicase family protein
NP_182290.1
  • zinc finger (CCCH type) helicase family protein; FUNCTIONS IN: helicase activity, zinc ion binding, nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT2G01130.1); Has 9601 Blast hits to 8936 proteins in 1526 species: Archae - 0; Bacteria - 3317; Metazoa - 2456; Fungi - 1337; Plants - 806; Viruses - 205; Other Eukaryotes - 1480 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    19545656..19551171 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_130336.3 → NP_182290.1  zinc finger (CCCH type) helicase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_182290.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    C0SV94, O22243
    UniProtKB/TrEMBL
    A0A178W1C2
    Conserved Domains (4) summary
    smart00356
    Location:730 → 753
    ZnF_C3H1; zinc finger
    smart00487
    Location:33 → 211
    DEXDc; DEAD-like helicases superfamily
    cd00046
    Location:43 → 178
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00271
    Location:262 → 382
    Helicase_C; Helicase conserved C-terminal domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O22243.2

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