U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LAC6 laccase 6 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819269, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
LAC6
Official Full Name
laccase 6
Primary source
TAIR:AT2G46570
Locus tag
AT2G46570
See related
Araport:AT2G46570
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F13A10.10; laccase 6
Summary
putative laccase, a member of laccase family of genes (with 17 members in Arabidopsis).
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LAC6 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Sequence:
Chromosome: 2; NC_003071.7 (19126272..19129069)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene transducin family protein / WD-40 repeat family protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene Pyridoxamine 5'-phosphate oxidase family protein Neighboring gene Dof-type zinc finger DNA-binding family protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
  
enables hydroquinone:oxygen oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
laccase 6
NP_182180.1
  • laccase 6 (LAC6); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: shoot, hypocotyl, root, flower, leaf; CONTAINS InterPro DOMAIN/s: Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 5 (TAIR:AT2G40370.1); Has 9565 Blast hits to 7786 proteins in 1266 species: Archae - 28; Bacteria - 3648; Metazoa - 481; Fungi - 3482; Plants - 1556; Viruses - 0; Other Eukaryotes - 370 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    19126272..19129069
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_130222.2 → NP_182180.1  laccase 6 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_182180.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8RY28, Q9ZPY2
    UniProtKB/TrEMBL
    A0A5S9X814, A0A654FD18
    Conserved Domains (4) summary
    cd13849
    Location:34 → 150
    CuRO_1_LCC_plant; The first cupredoxin domain of plant laccases
    cd13875
    Location:165 → 312
    CuRO_2_LCC_plant; The second cupredoxin domain of the plant laccases
    cd13897
    Location:413 → 552
    CuRO_3_LCC_plant; The third cupredoxin domain of the plant laccases
    TIGR03389
    Location:29 → 569
    laccase; laccase, plant

  2. NM_001337204.1 → NP_001324819.1  laccase 6 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B1C0, A0A5S9X814, A0A654FD18
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9ZPY2.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.